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This page was generated on 2024-05-04 11:39:50 -0400 (Sat, 04 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4753
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4486
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4519
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4479
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1742/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RESOLVE 1.6.0  (landing page)
Luca De Sano
Snapshot Date: 2024-05-03 14:00:19 -0400 (Fri, 03 May 2024)
git_url: https://git.bioconductor.org/packages/RESOLVE
git_branch: RELEASE_3_19
git_last_commit: 2500b74
git_last_commit_date: 2024-04-30 11:45:25 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

CHECK results for RESOLVE on lconway


To the developers/maintainers of the RESOLVE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RESOLVE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RESOLVE
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.6.0.tar.gz
StartedAt: 2024-05-04 00:22:07 -0400 (Sat, 04 May 2024)
EndedAt: 2024-05-04 00:37:58 -0400 (Sat, 04 May 2024)
EllapsedTime: 951.6 seconds
RetCode: 0
Status:   OK  
CheckDir: RESOLVE.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/RESOLVE.Rcheck’
* using R version 4.4.0 beta (2024-04-14 r86421)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RESOLVE/DESCRIPTION’ ... OK
* this is package ‘RESOLVE’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RESOLVE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
signaturesSignificance  135.803  1.168 138.114
signaturesCV            112.152  0.926 113.987
signaturesDecomposition  81.042  0.671  82.348
signaturesAssignment     43.619  0.409  44.474
getMNVCounts             15.273  0.139  15.523
getIDCounts               8.331  0.536   9.096
groupsMNVPlot             5.549  0.224   5.834
getSBSCounts              1.603  1.149   5.037
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

RESOLVE.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RESOLVE
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘RESOLVE’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RESOLVE)

Tests output

RESOLVE.Rcheck/tests/testthat.Rout


R version 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> Sys.setenv("R_TESTS" = "")
> 
> library("testthat")
> library("RESOLVE")
> 
> test_check("RESOLVE")
[ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ]

[ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ]
> 
> proc.time()
   user  system elapsed 
197.841   2.739 202.207 

Example timings

RESOLVE.Rcheck/RESOLVE-Ex.timings

nameusersystemelapsed
getCNCounts0.0190.0020.022
getIDCounts8.3310.5369.096
getMNVCounts15.273 0.13915.523
getSBSCounts1.6031.1495.037
groupsCNPlot3.3140.0573.391
groupsCXPlot2.1310.0712.216
groupsIDPlot4.8440.0464.919
groupsMNVPlot5.5490.2245.834
groupsSBSPlot4.0270.0974.167
patientsCNPlot1.4670.0201.503
patientsCXPlot0.7340.0110.754
patientsIDPlot2.3040.0282.358
patientsMNVPlot1.5370.0171.573
patientsSBSPlot0.9560.0151.039
signaturesAssignment43.619 0.40944.474
signaturesCNPlot2.1060.0232.141
signaturesCV112.152 0.926113.987
signaturesCXPlot1.0880.0131.109
signaturesDecomposition81.042 0.67182.348
signaturesIDPlot3.4620.0343.520
signaturesMNVPlot2.3390.0232.383
signaturesSBSPlot1.5620.0191.594
signaturesSignificance135.803 1.168138.114