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This page was generated on 2024-05-04 11:40:52 -0400 (Sat, 04 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4753
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4486
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4519
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4479
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1467/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OmnipathR 3.12.0  (landing page)
Denes Turei
Snapshot Date: 2024-05-03 14:00:19 -0400 (Fri, 03 May 2024)
git_url: https://git.bioconductor.org/packages/OmnipathR
git_branch: RELEASE_3_19
git_last_commit: 330f65c
git_last_commit_date: 2024-04-30 11:18:21 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    ERROR    OK  
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    ERROR  
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

CHECK results for OmnipathR on kunpeng2


To the developers/maintainers of the OmnipathR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: OmnipathR
Version: 3.12.0
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:OmnipathR.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings OmnipathR_3.12.0.tar.gz
StartedAt: 2024-05-04 10:15:35 -0000 (Sat, 04 May 2024)
EndedAt: 2024-05-04 10:33:06 -0000 (Sat, 04 May 2024)
EllapsedTime: 1051.0 seconds
RetCode: 1
Status:   ERROR  
CheckDir: OmnipathR.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:OmnipathR.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings OmnipathR_3.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/OmnipathR.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OmnipathR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OmnipathR’ version ‘3.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OmnipathR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... NOTE
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:02] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:02] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Pandoc version: `2.12`.
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:02] [TRACE]   [OmnipathR] Cache locked: FALSE

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:16] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:16] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Pandoc version: `2.12`.
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:16:16] [TRACE]   [OmnipathR] Cache locked: FALSE
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘oma_pairwise_translated’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘OmnipathR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: organism_for
> ### Title: Make sure the resource supports the organism and it has the ID
> ### Aliases: organism_for
> 
> ### ** Examples
> 
> organism_for(10116, 'chalmers-gem')
[1] "Rat"
> # [1] "Rat"
> organism_for(6239, 'chalmers-gem')
Error in organism_for(6239, "chalmers-gem") : 
  Organism `6239` (common_name: `Caenorhabditis elegans (Nematode, N2)`; common_name: `Caenorhabditis elegans (Nematode, N2)`) is not supported by resource `chalmers-gem`. Supported organisms: Human, Mouse, Rat, Zebrafish, Drosophila melanogaster (Fruit fly), Caenorhabditis elegans (PRJNA13758).
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Package textcomp Error: Symbol \textrightarrow not provided by
(textcomp)                font family ptm in TS1 encoding.
(textcomp)                Default family used instead.

See the textcomp package documentation for explanation.
* checking PDF version of manual without index ... ERROR
* DONE

Status: 2 ERRORs, 2 WARNINGs, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/OmnipathR.Rcheck/00check.log’
for details.


Installation output

OmnipathR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL OmnipathR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’
* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:37] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Contains 6 files.
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:37] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Pandoc version: `2.12`.
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:37] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:39] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:39] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] Pandoc version: `2.12`.
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-03 20:38:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:40] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-03 20:38:40] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-03 20:38:40] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (OmnipathR)

Tests output

OmnipathR.Rcheck/tests/testthat.Rout


R version 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> #!/usr/bin/env Rscript
> 
> #
> #  This file is part of the `OmnipathR` R package
> #
> #  Copyright
> #  2018-2024
> #  Saez Lab, Uniklinik RWTH Aachen, Heidelberg University
> #
> #  File author(s): Alberto Valdeolivas
> #                  Dénes Türei (turei.denes@gmail.com)
> #                  Attila Gábor
> #
> #  Distributed under the MIT (Expat) License.
> #  See accompanying file `LICENSE` or find a copy at
> #      https://directory.fsf.org/wiki/License:Expat
> #
> #  Website: https://r.omnipathdb.org/
> #  Git repo: https://github.com/saezlab/OmnipathR
> #
> 
> 
> library(testthat)
> library(OmnipathR)
[2024-05-04 10:31:54] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-04 10:31:54] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:31:54] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2024-05-04 10:31:54] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-04 10:31:54] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2024-05-04 10:31:54] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-04 10:31:54] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-04 10:31:54] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-04 10:31:54] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:31:54] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2024-05-04 10:31:55] [TRACE]   [OmnipathR] Pandoc version: `2.12`.
[2024-05-04 10:31:55] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-04 10:31:55] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:31:55] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-04 10:31:55] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:31:55] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-04 10:31:55] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:31:55] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-04 10:31:55] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-04 10:31:55] [TRACE]   [OmnipathR] Cache locked: FALSE
> 
> test_check('OmnipathR')
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 34 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 34 ]
> 
> proc.time()
   user  system elapsed 
 12.292   0.865  56.235 

Example timings

OmnipathR.Rcheck/OmnipathR-Ex.timings

nameusersystemelapsed
OmnipathR000
all_uniprot_acs0.0280.0040.032
all_uniprots0.0150.0000.015
ancestors0.0150.0000.016
annotated_network 1.920 0.13410.097
annotation_categories103.858 0.043105.675
biomart_query0.8010.0205.938
bioplex10.0160.0000.016
bioplex20.0120.0040.016
bioplex30.0160.0000.016
bioplex_all0.0150.0000.016
bioplex_hct116_10.0140.0000.014
bma_motif_es0.3670.0202.101
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get_resources0.0770.0041.229
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giant_component12.879 0.34314.903
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go_annot_slim0.0010.0000.000
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guide2pharma_download0.0110.0040.016
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homologene_download0.0150.0000.015
homologene_raw0.0250.0000.025
homologene_uniprot_orthology0.0160.0000.016
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htridb_download0.0160.0000.015
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import_intercell_network0.0160.0000.016
import_kinaseextra_interactions1.5180.0284.230
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import_omnipath_complexes0.6250.0083.206
import_omnipath_enzsub1.2330.0202.364
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import_omnipath_intercell0.4950.0121.508
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import_tf_mirna_interactions0.7580.0322.903
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interaction_graph0.3670.0001.477
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latin_name0.0580.0000.058
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nichenet_gr_network_pathwaycommons0.0140.0000.014
nichenet_gr_network_regnetwork0.0150.0000.015
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nichenet_ligand_activities000
nichenet_ligand_target_links000
nichenet_ligand_target_matrix000
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nichenet_signaling_network_vinayagam0.0160.0000.015
nichenet_test0.0000.0000.001
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omnipath_cache_autoclean000
omnipath_cache_clean0.0090.0000.009
omnipath_cache_clean_db0.1090.0080.117
omnipath_cache_download_ready0.6620.0081.169
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omnipath_cache_get0.1250.0040.130
omnipath_cache_key0.0010.0000.002
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omnipath_cache_move_in0.2700.0120.288
omnipath_cache_remove0.1570.0040.168
omnipath_cache_save0.2250.0000.238
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omnipath_cache_set_ext0.1520.0120.173
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omnipath_cache_wipe000
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omnipath_logfile0.0000.0000.001
omnipath_msg0.0080.0000.008
omnipath_reset_config000
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omnipath_set_console_loglevel0.0010.0000.002
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omnipath_show_db0.0680.0000.068
omnipath_unlock_cache_db000
only_from000
ontology_ensure_id0.0010.0000.001
ontology_ensure_name0.0000.0000.001
ontology_name_id0.0000.0000.001