Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-05-04 11:38:54 -0400 (Sat, 04 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4753
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4486
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4519
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4479
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 202/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-05-03 14:00:19 -0400 (Fri, 03 May 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: RELEASE_3_19
git_last_commit: a7f41b2
git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

CHECK results for biodbHmdb on lconway


To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
StartedAt: 2024-05-03 20:25:51 -0400 (Fri, 03 May 2024)
EndedAt: 2024-05-03 20:27:51 -0400 (Fri, 03 May 2024)
EllapsedTime: 120.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.0 beta (2024-04-14 r86421)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.


Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-05-03 20:26:38.277][biodb::testContext]
biodb.INFO [2024-05-03 20:26:38.293][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-03 20:26:38.295][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-05-03 20:26:38.297][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-03 20:26:38.306][biodb::testContext]
biodb.INFO [2024-05-03 20:26:38.309][biodb::testThat]
biodb.INFO [2024-05-03 20:26:38.311][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-05-03 20:26:38.313][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:38.320][biodb::testThat]
biodb.INFO [2024-05-03 20:26:38.630][biodb::testContext]
biodb.INFO [2024-05-03 20:26:38.632][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-03 20:26:38.634][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-05-03 20:26:38.652][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-03 20:26:38.654][biodb::testContext]
biodb.INFO [2024-05-03 20:26:38.675][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-03 20:26:38.678][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-03 20:26:38.698][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-03 20:26:38.700][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-03 20:26:38.708][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-03 20:26:38.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.722][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-03 20:26:38.809][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-03 20:26:38.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.818][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-03 20:26:38.826][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-03 20:26:38.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.836][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-03 20:26:38.845][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-03 20:26:38.847][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-03 20:26:38.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.853][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-03 20:26:38.861][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-03 20:26:38.863][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-03 20:26:38.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.878][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-03 20:26:38.881][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-03 20:26:38.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.896][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-03 20:26:38.899][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-03 20:26:38.901][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-03 20:26:38.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.910][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-03 20:26:38.912][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-03 20:26:38.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.927][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-03 20:26:38.930][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-03 20:26:38.932][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-03 20:26:38.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.944][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-03 20:26:38.946][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-03 20:26:38.948][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-03 20:26:38.950][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-03 20:26:38.960][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-03 20:26:38.962][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-03 20:26:38.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.976][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-03 20:26:38.978][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-03 20:26:38.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.985][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-03 20:26:38.992][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-03 20:26:38.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:38.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:38.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:38.999][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-03 20:26:39.008][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-03 20:26:39.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.016][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-03 20:26:39.024][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-03 20:26:39.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.032][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-03 20:26:39.041][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-03 20:26:39.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.049][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-03 20:26:39.057][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-03 20:26:39.101][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-03 20:26:39.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.109][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-03 20:26:39.110][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-03 20:26:39.112][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-03 20:26:39.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.124][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-03 20:26:39.216][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.267][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-03 20:26:39.275][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.278][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:39.281][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.284][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.288][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.290][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.293][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-03 20:26:39.295][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:39.303][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.312][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-03 20:26:39.315][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:39.317][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.319][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.321][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-03 20:26:39.321][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-03 20:26:39.321][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-03 20:26:39.321][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-03 20:26:39.321][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-03 20:26:39.330][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:39.333][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:39.335][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:39.337][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:39.346][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:39.348][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:39.350][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.352][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.387][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:39.396][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:39.398][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.401][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.404][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-03 20:26:39.416][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.418][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-03 20:26:39.421][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.428][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:39.431][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.433][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.435][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.444][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.447][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-03 20:26:39.449][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:39.452][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.461][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-03 20:26:39.463][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:39.472][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.475][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.484][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-03 20:26:39.484][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-03 20:26:39.484][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-03 20:26:39.484][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-03 20:26:39.484][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-03 20:26:39.487][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:39.489][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:39.490][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:39.496][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:39.499][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:39.501][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:39.503][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.505][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.516][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:39.520][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:39.522][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.525][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.535][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-03 20:26:39.540][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.543][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-03 20:26:39.551][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.554][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:39.557][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.560][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.571][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.574][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.576][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-03 20:26:39.586][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:39.589][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.591][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-03 20:26:39.594][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:39.600][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.602][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.606][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.608][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:39.616][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:39.618][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:39.621][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:39.623][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:39.631][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:39.634][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.636][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.638][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:39.640][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:39.651][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.654][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.657][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-03 20:26:39.665][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.667][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-03 20:26:39.669][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.671][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:39.681][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.683][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.685][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.688][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.698][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-03 20:26:39.700][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:39.703][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.705][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-03 20:26:39.713][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:39.716][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.718][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:39.721][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.727][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:39.729][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:39.731][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:39.733][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:39.735][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:39.747][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:39.750][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:39.752][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.754][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:39.761][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:39.763][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:39.764][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:39.781][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-03 20:26:39.783][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:39.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:39.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:39.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:39.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:39.986][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-03 20:26:40.016][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-03 20:26:40.019][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-03 20:26:40.021][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-03 20:26:40.023][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-03 20:26:40.051][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-03 20:26:40.053][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-03 20:26:40.056][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-03 20:26:40.058][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-03 20:26:40.060][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-03 20:26:40.080][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-03 20:26:40.100][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-03 20:26:40.121][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-03 20:26:40.142][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-03 20:26:40.144][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-03 20:26:40.164][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-03 20:26:40.166][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-03 20:26:40.168][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-03 20:26:40.170][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-03 20:26:40.173][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-03 20:26:40.175][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-03 20:26:40.177][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-03 20:26:40.179][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-03 20:26:40.181][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-03 20:26:40.183][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-03 20:26:40.184][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-03 20:26:40.186][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-03 20:26:40.188][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-03 20:26:40.190][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-03 20:26:40.192][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-03 20:26:40.194][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-03 20:26:40.196][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-03 20:26:40.198][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-03 20:26:40.200][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-03 20:26:40.202][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-03 20:26:40.204][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-03 20:26:40.206][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-03 20:26:40.208][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-03 20:26:40.210][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-03 20:26:40.211][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-03 20:26:40.216][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-03 20:26:40.218][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-03 20:26:40.220][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-03 20:26:40.222][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-03 20:26:40.224][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-03 20:26:40.226][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-03 20:26:40.228][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-03 20:26:40.230][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-03 20:26:40.232][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-03 20:26:40.234][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-03 20:26:40.236][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-03 20:26:40.238][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-03 20:26:40.240][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-03 20:26:40.242][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-03 20:26:40.244][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-03 20:26:40.248][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-03 20:26:40.251][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-03 20:26:40.253][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-03 20:26:40.255][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-03 20:26:40.257][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-03 20:26:40.259][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-03 20:26:40.261][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-03 20:26:40.264][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-03 20:26:40.266][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-03 20:26:40.268][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-03 20:26:40.270][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-03 20:26:40.272][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-03 20:26:40.282][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-03 20:26:40.285][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-03 20:26:40.288][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-03 20:26:40.296][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-03 20:26:40.298][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-03 20:26:40.300][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-03 20:26:40.303][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-03 20:26:40.305][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-03 20:26:40.315][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-03 20:26:40.317][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-03 20:26:40.320][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-03 20:26:40.322][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-03 20:26:40.330][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-03 20:26:40.333][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-03 20:26:40.335][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-03 20:26:40.341][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-03 20:26:40.350][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-03 20:26:40.361][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-03 20:26:40.366][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-03 20:26:40.374][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.378][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:40.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:40.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:40.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:40.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:40.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:40.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:40.741][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-03 20:26:40.763][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:26:40.766][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:40.768][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-03 20:26:40.779][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:40.781][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:40.784][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:40.786][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-03 20:26:40.788][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:40.794][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:40.796][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-03 20:26:40.798][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:40.799][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:40.802][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-03 20:26:40.803][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-03 20:26:40.810][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-03 20:26:40.812][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:40.814][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-03 20:26:40.814][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-03 20:26:40.814][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-03 20:26:40.815][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-03 20:26:40.817][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:40.825][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:40.827][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:40.829][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:40.830][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:40.831][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:40.833][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-03 20:26:40.833][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-03 20:26:40.841][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:40.843][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:40.845][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:40.846][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:40.862][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-03 20:26:40.865][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-03 20:26:40.873][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-03 20:26:40.877][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-03 20:26:40.880][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-03 20:26:40.947][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:26:40.949][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-03 20:26:40.955][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:26:40.969][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-03 20:26:40.982][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:26:40.984][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:26:40.986][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-03 20:26:40.988][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-03 20:26:40.990][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-03 20:26:40.990][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-03 20:26:40.991][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:40.998][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:40.999][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-03 20:26:41.000][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-03 20:26:41.002][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:26:41.068][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-03 20:26:41.071][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:26:41.079][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:26:41.081][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-03 20:26:41.083][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:26:41.085][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-03 20:26:41.103][biodb::testThat]
biodb.INFO [2024-05-03 20:26:41.112][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-03 20:26:41.114][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:41.116][biodb::testThat]
biodb.TRACE[2024-05-03 20:26:41.122][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-05-03 20:26:41.125][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-03 20:26:41.130][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-03 20:26:41.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:26:41.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:41.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:41.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:41.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:41.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:41.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-03 20:26:41.201][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:41.203][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:41.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:41.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.255][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:41.256][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:41.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.264][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.335][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:41.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:41.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.352][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:41.355][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:41.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.358][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.361][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:41.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:41.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.367][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:41.369][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:41.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.377][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.381][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:41.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:41.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.404][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:41.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:41.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.421][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:41.423][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:41.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.431][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:41.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:41.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.448][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:41.450][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:41.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.453][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:41.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:41.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:41.472][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:41.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.480][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:41.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:41.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.516][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:41.518][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:41.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.538][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:41.547][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:41.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.565][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:41.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:41.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:41.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:41.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:41.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:41.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:41.620][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:41.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.634][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:41.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:41.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:41.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.658][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:41.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:41.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.677][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:41.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:41.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.683][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:41.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.700][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:41.702][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:41.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.712][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:41.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:41.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:41.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:41.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.750][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-03 20:26:41.759][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:41.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.763][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.766][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-03 20:26:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:41.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:41.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:41.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:41.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:41.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:41.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.920][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:41.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:41.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:41.993][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:42.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:42.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:42.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.021][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:42.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:42.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:42.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:42.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:42.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:42.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:42.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:42.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:42.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:42.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:42.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:42.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:42.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:42.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:42.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:42.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.256][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:42.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.270][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:42.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:42.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:42.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:42.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:42.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:42.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:42.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:42.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:42.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:42.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:42.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:42.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:42.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:42.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:42.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:42.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:42.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:42.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:42.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:42.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:42.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:42.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:42.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:42.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:42.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:42.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:42.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.608][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:42.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:42.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.623][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:42.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:42.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.647][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:42.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:42.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:42.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:42.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:42.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.702][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-03 20:26:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.765][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-03 20:26:42.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:42.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:42.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:42.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.925][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:42.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:42.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.975][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:42.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:42.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:42.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:43.104][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-03 20:26:43.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-03 20:26:43.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-03 20:26:43.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-03 20:26:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-03 20:26:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-03 20:26:43.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-03 20:26:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-03 20:26:43.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-03 20:26:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.252][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.347][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:43.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:43.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.358][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:43.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:43.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.372][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:43.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.442][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:43.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:43.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.492][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:43.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.499][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:43.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:43.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.518][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:43.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:43.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.532][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:43.534][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:43.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.537][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.538][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:43.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:43.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:43.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:43.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:43.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:43.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:43.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.634][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:43.636][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:43.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.640][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:43.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:43.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:43.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:43.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:43.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:43.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:43.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:43.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:43.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:43.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.714][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:43.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:43.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:43.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:43.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:43.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:43.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:43.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.799][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:43.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:43.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:43.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:43.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:43.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:43.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.889][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:43.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:43.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.895][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:43.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:43.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:43.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:43.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:43.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:43.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.964][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:43.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:43.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.977][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:43.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:44.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:44.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:44.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:44.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.058][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:44.066][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:44.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.070][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.072][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:44.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:44.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:44.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:44.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:44.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.147][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:44.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:44.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:44.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.193][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.200][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:44.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:44.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.214][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.233][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:44.235][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:44.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.240][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:44.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:44.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:44.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:44.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:44.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:44.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:44.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:44.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:44.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:44.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.319][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:44.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:44.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:44.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:44.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:44.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.406][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:44.408][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:44.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.411][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:44.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:44.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:44.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:44.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:44.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:44.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.496][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:44.507][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:44.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:44.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:44.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:44.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:44.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.577][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:44.583][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:44.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.587][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:44.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:44.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:44.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:44.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:44.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:44.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:44.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:44.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.672][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:44.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:44.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.677][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:44.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:44.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:44.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:44.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:44.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:44.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:44.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:44.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.768][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:44.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:44.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.775][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:44.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:44.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:44.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:44.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:44.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:44.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:44.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.862][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:44.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.893][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:44.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:44.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:44.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.947][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:44.953][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:44.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.959][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:44.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:44.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:44.984][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:44.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:44.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:44.998][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.008][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:45.010][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:45.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.013][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.051][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:45.053][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:45.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.056][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:45.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:45.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.095][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:45.097][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:45.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.100][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.115][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:45.117][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:45.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.120][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.141][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:45.143][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:45.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.147][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.172][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:45.174][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:45.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.187][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:45.189][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:45.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.192][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.220][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:45.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:45.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.226][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:45.246][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:45.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:45.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:45.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.301][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:45.303][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:45.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.305][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.313][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:45.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:45.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.317][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.325][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:45.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:45.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.330][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.337][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:45.339][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:45.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.349][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.380][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:45.382][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:45.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.405][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:45.406][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:45.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.409][ef$get] fields variable is a list.
biodb.INFO [2024-05-03 20:26:45.434][biodb::testThat]
biodb.INFO [2024-05-03 20:26:45.436][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-03 20:26:45.437][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:45.439][biodb::testThat]
biodb.DEBUG[2024-05-03 20:26:45.475][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-05-03 20:26:45.496][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-03 20:26:45.511][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:45.514][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-03 20:26:45.518][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-05-03 20:26:45.520][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-03 20:26:45.523][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-05-03 20:26:45.525][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-03 20:26:45.603][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-03 20:26:45.606][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-03 20:26:45.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:26:45.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:45.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:45.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:45.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:45.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:45.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-03 20:26:45.643][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:45.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:45.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.648][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.664][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:45.665][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:45.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.674][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.676][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:45.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.689][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:45.690][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:45.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.707][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:45.709][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:45.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.717][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.719][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:45.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:45.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.736][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:45.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:45.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.749][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:45.750][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:45.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.753][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:45.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:45.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:45.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:45.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.796][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:45.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:45.809][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:45.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.812][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:45.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:45.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.826][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:45.831][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:45.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:45.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.848][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:45.851][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:45.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.855][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:45.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:45.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.872][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:45.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:45.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.879][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:45.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:45.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.889][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:45.891][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:45.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.894][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:45.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:45.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:45.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:45.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:45.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.920][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:45.922][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:45.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:45.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.934][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:45.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:45.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:45.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:45.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.945][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:45.947][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:45.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.949][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:45.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:45.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:45.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.968][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-03 20:26:45.969][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:45.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-03 20:26:45.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:45.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:45.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:45.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:45.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:45.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.995][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:45.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:46.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:46.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:46.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:46.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:46.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:46.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:46.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:46.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:46.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:46.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:46.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:46.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:46.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:46.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:46.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:46.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:46.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:46.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:46.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:46.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:46.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:46.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:46.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:46.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:46.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:46.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:46.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:46.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:46.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:46.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:46.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:46.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.156][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:46.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:46.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:46.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:46.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:46.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:46.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:46.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.208][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.213][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:46.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:46.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:46.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:46.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:46.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.234][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-03 20:26:46.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-03 20:26:46.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:46.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.281][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:46.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:46.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:46.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:46.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.290][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:46.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:46.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:46.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:46.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:46.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:46.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:46.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:46.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:46.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.326][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-03 20:26:46.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-03 20:26:46.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-03 20:26:46.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-03 20:26:46.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-03 20:26:46.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-03 20:26:46.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-03 20:26:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-03 20:26:46.362][biodb::testThat]
biodb.INFO [2024-05-03 20:26:46.363][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-03 20:26:46.365][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:46.367][biodb::testThat]
biodb.TRACE[2024-05-03 20:26:46.371][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.373][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.375][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.377][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-05-03 20:26:46.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.427][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-05-03 20:26:46.428][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-05-03 20:26:46.430][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-03 20:26:46.431][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-03 20:26:46.433][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.435][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.437][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-03 20:26:46.439][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.441][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-03 20:26:46.443][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-03 20:26:46.444][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-03 20:26:46.446][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-03 20:26:46.447][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-03 20:26:46.448][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-03 20:26:46.449][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-03 20:26:46.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.470][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-03 20:26:46.471][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-03 20:26:46.472][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-05-03 20:26:46.491][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.493][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.495][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.496][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-05-03 20:26:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.523][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.531][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-05-03 20:26:46.598][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-03 20:26:46.599][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-05-03 20:26:46.600][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-05-03 20:26:46.617][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.620][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.622][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-03 20:26:46.624][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.626][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-03 20:26:46.645][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-03 20:26:46.647][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-03 20:26:46.649][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-03 20:26:46.651][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-03 20:26:46.652][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-03 20:26:46.654][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-03 20:26:46.657][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.661][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.667][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.672][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:46.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:46.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.677][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-03 20:26:46.679][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-03 20:26:46.679][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-05-03 20:26:46.706][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.709][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.713][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.715][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-05-03 20:26:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.745][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.760][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-05-03 20:26:46.762][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-05-03 20:26:46.763][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-05-03 20:26:46.765][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-05-03 20:26:46.768][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.770][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.772][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-03 20:26:46.774][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.776][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-03 20:26:46.778][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-03 20:26:46.779][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-03 20:26:46.781][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-03 20:26:46.782][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-03 20:26:46.784][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-03 20:26:46.785][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-03 20:26:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.791][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.796][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:46.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.805][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-03 20:26:46.806][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-03 20:26:46.807][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-05-03 20:26:46.832][biodb::testThat]
biodb.INFO [2024-05-03 20:26:46.833][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-03 20:26:46.835][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:46.836][biodb::testThat]
biodb.TRACE[2024-05-03 20:26:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.878][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-05-03 20:26:46.879][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-03 20:26:46.880][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-03 20:26:46.882][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.884][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.886][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-03 20:26:46.888][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:46.890][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-03 20:26:46.892][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-03 20:26:46.893][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-03 20:26:46.894][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-03 20:26:46.896][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-03 20:26:46.897][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-03 20:26:46.898][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-03 20:26:46.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:46.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:46.923][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-03 20:26:46.925][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-05-03 20:26:46.950][biodb::testThat]
biodb.INFO [2024-05-03 20:26:46.951][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-03 20:26:46.952][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:46.954][biodb::testThat]
biodb.TRACE[2024-05-03 20:26:46.985][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-03 20:26:46.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-03 20:26:46.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-03 20:26:46.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-03 20:26:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:46.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-03 20:26:46.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-03 20:26:46.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:47.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:47.002][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-03 20:26:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-03 20:26:47.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:47.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-03 20:26:47.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-03 20:26:47.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:47.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:47.073][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-03 20:26:47.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-03 20:26:47.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:47.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-03 20:26:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-03 20:26:47.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:47.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:47.086][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-03 20:26:47.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-03 20:26:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-03 20:26:47.107][biodb::testThat]
biodb.INFO [2024-05-03 20:26:47.108][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-03 20:26:47.110][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:47.111][biodb::testThat]
biodb.INFO [2024-05-03 20:26:47.125][biodb::testThat]
biodb.INFO [2024-05-03 20:26:47.127][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-03 20:26:47.128][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:47.130][biodb::testThat]
biodb.INFO [2024-05-03 20:26:47.143][biodb::testThat]
biodb.INFO [2024-05-03 20:26:47.145][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-03 20:26:47.146][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:47.148][biodb::testThat]
biodb.DEBUG[2024-05-03 20:26:47.154][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-05-03 20:26:53.990][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-05-03 20:26:54.026][biodb::testThat]
biodb.INFO [2024-05-03 20:26:54.028][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-03 20:26:54.029][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:54.031][biodb::testThat]
biodb.DEBUG[2024-05-03 20:26:54.293][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-05-03 20:26:54.324][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:54.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:54.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.330][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.331][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:54.333][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:54.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.335][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.336][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:54.338][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:54.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.340][ef$get] fields variable is a list.
biodb.INFO [2024-05-03 20:26:54.342][biodb::testThat]
biodb.INFO [2024-05-03 20:26:54.344][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-05-03 20:26:54.345][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:54.346][biodb::testThat]
biodb.DEBUG[2024-05-03 20:26:54.349][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-05-03 20:26:54.431][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-03 20:26:54.434][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:54.436][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-03 20:26:54.461][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-05-03 20:26:54.463][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-03 20:26:54.465][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-03 20:26:54.466][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-03 20:26:54.469][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:54.470][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-03 20:26:54.472][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-03 20:26:54.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:26:54.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:54.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:54.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:54.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:54.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:54.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-03 20:26:54.492][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:54.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:54.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:54.551][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-05-03 20:26:54.553][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-05-03 20:26:54.604][biodb::testThat]
biodb.INFO [2024-05-03 20:26:54.606][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-05-03 20:26:54.607][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:54.609][biodb::testThat]
biodb.DEBUG[2024-05-03 20:26:54.625][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-05-03 20:26:54.736][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-05-03 20:26:54.739][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-03 20:26:54.743][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:54.750][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-03 20:26:54.754][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-05-03 20:26:54.756][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-03 20:26:54.758][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-03 20:26:54.764][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-03 20:26:54.767][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:54.769][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-03 20:26:54.771][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-03 20:26:54.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:26:54.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:54.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:54.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:54.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:54.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:54.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-03 20:26:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:54.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:54.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:54.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:54.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:54.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:54.923][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-05-03 20:26:54.932][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-05-03 20:26:54.934][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-05-03 20:26:54.982][biodb::testThat]
biodb.INFO [2024-05-03 20:26:54.984][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-05-03 20:26:54.986][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:54.987][biodb::testThat]
biodb.INFO [2024-05-03 20:26:55.048][biodb::testThat]
biodb.INFO [2024-05-03 20:26:55.050][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-05-03 20:26:55.052][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:55.053][biodb::testThat]
biodb.DEBUG[2024-05-03 20:26:55.063][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:55.067][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:55.070][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-03 20:26:55.080][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:55.082][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-03 20:26:55.085][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-03 20:26:55.087][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-03 20:26:55.121][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-03 20:26:55.125][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-05-03 20:26:55.154][biodb::testThat]
biodb.INFO [2024-05-03 20:26:55.156][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-05-03 20:26:55.158][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:55.159][biodb::testThat]
biodb.DEBUG[2024-05-03 20:26:55.170][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:55.173][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:55.176][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-03 20:26:55.186][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:55.188][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-03 20:26:55.191][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-03 20:26:55.193][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-03 20:26:55.200][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-03 20:26:55.202][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-05-03 20:26:55.234][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:55.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:55.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:55.240][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:55.249][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:55.252][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:55.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:55.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:55.257][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:55.267][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:55.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:55.272][ef$get] fields variable is a list.
biodb.INFO [2024-05-03 20:26:55.274][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-03 20:26:55.283][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-03 20:26:55.307][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-03 20:26:55.309][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-03 20:26:55.318][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:55.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:55.322][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:55.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:55.325][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-03 20:26:55.341][biodb::testContext]
biodb.INFO [2024-05-03 20:26:55.352][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-03 20:26:55.355][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-05-03 20:26:55.357][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-03 20:26:55.359][biodb::testContext]
biodb.INFO [2024-05-03 20:26:55.367][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-03 20:26:55.370][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-03 20:26:55.391][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-03 20:26:55.393][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-03 20:26:55.396][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-03 20:26:55.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.413][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-03 20:26:55.415][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-03 20:26:55.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.431][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-03 20:26:55.440][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-03 20:26:55.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.448][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-03 20:26:55.457][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-03 20:26:55.460][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-03 20:26:55.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.475][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-03 20:26:55.478][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-03 20:26:55.481][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-03 20:26:55.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.495][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-03 20:26:55.505][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-03 20:26:55.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.519][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-03 20:26:55.521][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-03 20:26:55.524][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-03 20:26:55.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.568][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-03 20:26:55.573][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-03 20:26:55.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.591][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-03 20:26:55.594][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-03 20:26:55.600][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-03 20:26:55.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.608][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-03 20:26:55.617][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-03 20:26:55.620][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-03 20:26:55.622][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-03 20:26:55.624][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-03 20:26:55.634][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-03 20:26:55.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.643][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-03 20:26:55.649][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-03 20:26:55.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.657][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-03 20:26:55.667][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-03 20:26:55.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.683][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-03 20:26:55.686][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-03 20:26:55.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.703][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-03 20:26:55.706][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-03 20:26:55.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.721][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-03 20:26:55.723][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-03 20:26:55.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.735][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-03 20:26:55.737][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-03 20:26:55.776][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-03 20:26:55.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.782][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-03 20:26:55.783][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-03 20:26:55.785][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-03 20:26:55.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:55.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:55.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:55.790][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-03 20:26:55.793][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:55.794][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-03 20:26:55.797][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.799][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:55.800][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.802][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:55.803][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:55.805][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:55.806][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-03 20:26:55.814][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:55.816][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.818][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-03 20:26:55.820][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:55.821][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:55.829][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.831][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-03 20:26:55.831][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-03 20:26:55.831][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-03 20:26:55.831][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-03 20:26:55.831][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-03 20:26:55.833][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:55.834][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:55.836][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:55.837][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:55.839][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:55.846][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:55.848][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:55.850][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:55.852][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:55.854][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:55.860][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:55.862][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:55.864][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-03 20:26:55.868][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:55.870][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-03 20:26:55.879][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.880][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:55.882][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.884][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:55.885][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:55.887][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:55.895][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-03 20:26:55.897][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:55.899][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.901][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-03 20:26:55.903][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:55.912][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:55.914][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.916][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-03 20:26:55.916][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-03 20:26:55.916][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-03 20:26:55.916][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-03 20:26:55.916][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-03 20:26:55.918][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:55.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:55.921][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:55.932][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:55.935][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:55.937][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:55.954][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:55.956][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:55.957][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:55.959][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:55.968][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:55.971][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:55.974][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-03 20:26:55.977][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.989][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-03 20:26:55.991][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.993][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:55.994][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:55.996][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:55.997][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:55.999][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:56.004][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-03 20:26:56.006][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:56.008][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:56.009][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-03 20:26:56.011][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:56.012][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:56.024][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:56.025][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:56.027][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:56.028][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:56.030][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:56.031][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:56.041][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:56.043][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:56.045][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:56.046][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:56.048][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:56.049][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:56.051][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:56.062][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:56.064][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-03 20:26:56.066][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:56.068][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-03 20:26:56.070][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:56.079][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:56.081][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:56.083][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:56.085][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:56.087][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:56.094][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-03 20:26:56.095][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:56.097][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:56.099][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-03 20:26:56.100][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:56.102][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:56.109][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:56.111][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:56.113][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:56.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:56.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:56.117][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:56.126][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:56.127][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:56.129][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:56.131][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:56.132][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:56.134][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:56.142][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:56.144][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:56.146][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-03 20:26:56.147][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.384][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-03 20:26:56.386][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-03 20:26:56.398][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-03 20:26:56.400][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-03 20:26:56.403][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-03 20:26:56.405][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-03 20:26:56.412][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-03 20:26:56.415][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-03 20:26:56.417][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-03 20:26:56.419][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-03 20:26:56.427][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-03 20:26:56.429][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-03 20:26:56.431][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-03 20:26:56.433][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-03 20:26:56.441][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-03 20:26:56.444][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-03 20:26:56.447][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-03 20:26:56.449][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-03 20:26:56.457][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-03 20:26:56.460][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-03 20:26:56.462][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-03 20:26:56.464][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-03 20:26:56.466][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-03 20:26:56.472][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-03 20:26:56.475][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-03 20:26:56.477][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-03 20:26:56.479][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-03 20:26:56.488][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-03 20:26:56.492][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-03 20:26:56.494][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-03 20:26:56.497][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-03 20:26:56.504][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-03 20:26:56.506][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-03 20:26:56.509][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-03 20:26:56.511][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-03 20:26:56.513][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-03 20:26:56.533][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-03 20:26:56.536][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-03 20:26:56.538][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-03 20:26:56.540][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-03 20:26:56.547][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-03 20:26:56.550][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-03 20:26:56.552][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-03 20:26:56.554][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-03 20:26:56.556][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-03 20:26:56.568][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-03 20:26:56.572][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-03 20:26:56.589][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-03 20:26:56.591][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-03 20:26:56.598][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-03 20:26:56.601][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-03 20:26:56.603][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-03 20:26:56.605][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-03 20:26:56.608][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-03 20:26:56.620][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-03 20:26:56.622][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-03 20:26:56.624][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-03 20:26:56.626][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-03 20:26:56.636][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-03 20:26:56.639][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-03 20:26:56.641][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-03 20:26:56.643][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-03 20:26:56.659][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-03 20:26:56.661][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-03 20:26:56.664][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-03 20:26:56.666][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-03 20:26:56.676][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-03 20:26:56.679][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-03 20:26:56.681][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-03 20:26:56.683][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-03 20:26:56.686][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-03 20:26:56.696][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-03 20:26:56.699][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-03 20:26:56.703][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-03 20:26:56.705][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-03 20:26:56.713][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-03 20:26:56.716][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-03 20:26:56.718][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-03 20:26:56.721][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-03 20:26:56.728][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-03 20:26:56.730][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-03 20:26:56.732][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-03 20:26:56.735][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-03 20:26:56.746][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-03 20:26:56.750][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-03 20:26:56.752][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-03 20:26:56.754][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.756][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:56.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:56.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:56.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:56.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:56.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:56.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:56.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:57.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:57.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:57.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:57.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:57.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:57.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:57.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:57.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:57.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:57.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:57.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:57.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:57.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:57.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:57.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:57.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:57.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:57.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:57.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:57.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:57.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:57.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:57.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:57.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:57.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:57.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:57.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:57.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:57.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:57.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:57.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:57.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:57.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:57.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:57.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:57.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:57.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:57.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:57.108][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-03 20:26:57.131][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:26:57.134][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:57.135][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-03 20:26:57.137][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:57.148][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:57.149][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:57.151][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-03 20:26:57.153][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:57.154][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:57.162][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-03 20:26:57.164][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:57.166][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:57.168][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-03 20:26:57.170][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-03 20:26:57.172][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-03 20:26:57.181][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:57.183][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-03 20:26:57.183][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-03 20:26:57.183][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-03 20:26:57.185][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-03 20:26:57.186][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:57.187][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:57.189][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:57.197][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:57.198][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:57.200][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:57.201][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-03 20:26:57.201][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-03 20:26:57.203][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:57.204][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:57.212][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:57.214][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:57.216][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-03 20:26:57.218][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-03 20:26:57.237][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-03 20:26:57.247][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-03 20:26:57.250][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-03 20:26:57.255][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:26:57.266][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-03 20:26:57.268][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:26:57.277][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-03 20:26:57.279][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:26:57.285][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:26:57.288][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-03 20:26:57.289][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-03 20:26:57.291][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-03 20:26:57.291][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-03 20:26:57.292][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:57.293][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:57.302][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-03 20:26:57.305][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-03 20:26:57.308][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:26:57.311][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-03 20:26:57.313][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:26:57.314][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:26:57.316][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-03 20:26:57.325][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:26:57.327][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-03 20:26:57.330][biodb::testThat]
biodb.INFO [2024-05-03 20:26:57.332][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-05-03 20:26:57.333][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:57.335][biodb::testThat]
biodb.DEBUG[2024-05-03 20:26:57.349][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:57.351][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:57.360][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-03 20:26:57.363][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:57.365][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-03 20:26:57.368][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-03 20:26:57.369][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-03 20:26:57.379][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-03 20:26:57.381][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-03 20:26:57.386][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-05-03 20:26:57.409][biodb::testThat]
biodb.INFO [2024-05-03 20:26:57.411][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-05-03 20:26:57.413][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:26:57.414][biodb::testThat]
biodb.DEBUG[2024-05-03 20:26:57.457][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-05-03 20:26:57.465][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-03 20:26:57.468][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:26:57.470][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-03 20:26:57.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-05-03 20:26:57.483][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-03 20:26:57.486][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-05-03 20:26:57.488][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-03 20:26:57.490][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-03 20:26:57.492][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-03 20:26:57.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:26:57.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:57.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:57.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:57.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:57.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:57.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-03 20:26:57.526][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:57.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:57.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.531][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:57.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:57.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.547][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:57.548][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:57.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.578][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:57.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:57.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.585][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:57.594][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:57.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.597][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.599][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:57.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:57.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.613][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:57.614][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:57.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.617][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.619][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:57.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:57.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:57.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:57.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:57.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:57.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.655][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:57.666][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:57.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.670][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:57.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:57.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.689][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:57.691][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:57.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:57.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:57.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:57.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:57.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.739][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:57.741][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:57.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.744][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:57.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.759][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:57.760][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:57.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:57.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:57.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.779][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:57.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:57.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.783][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:57.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:57.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:57.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:57.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.791][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:57.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:57.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:57.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.821][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:57.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:57.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:57.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.857][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:57.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:57.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.870][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:57.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:57.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.887][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:57.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:57.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.900][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:57.901][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:57.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.904][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.908][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:57.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:57.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:57.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:57.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.921][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:57.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:57.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.929][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-03 20:26:57.934][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:57.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.940][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-03 20:26:57.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:57.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:57.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:57.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:57.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:57.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:57.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.972][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:57.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:57.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.984][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:26:57.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:26:57.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.991][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:57.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:57.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:57.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:57.997][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:58.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.007][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:26:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:26:58.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:58.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:58.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:58.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:26:58.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:26:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:58.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:58.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:58.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:58.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:58.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:26:58.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:58.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:58.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:26:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:58.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:58.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:58.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:58.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:58.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:26:58.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:58.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:58.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:58.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:26:58.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.248][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:58.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.262][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:58.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:58.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.275][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:26:58.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:26:58.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:58.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:58.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:58.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:58.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:26:58.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:26:58.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:58.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:58.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:58.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:26:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:26:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:58.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:58.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.394][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:58.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:58.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:58.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:26:58.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:58.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:58.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:58.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:26:58.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:58.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:58.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:58.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:58.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:58.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:58.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:58.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:58.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:58.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:58.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:58.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:26:58.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:58.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:58.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.544][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:58.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:58.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.555][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:58.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:26:58.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:58.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:58.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:26:58.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:26:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.605][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-03 20:26:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.650][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-03 20:26:58.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:26:58.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:58.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:58.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:58.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:58.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:58.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:58.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:58.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:58.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:26:58.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:26:58.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.735][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:58.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:58.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.749][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:58.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:58.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:58.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:58.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.769][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:58.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:26:58.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:58.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:58.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:58.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:58.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:58.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:58.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:58.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:58.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:58.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:58.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:58.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:26:58.881][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-05-03 20:26:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:58.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:58.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:58.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:58.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:26:58.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:26:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:26:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:26:58.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-03 20:26:58.942][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-03 20:26:58.944][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-03 20:26:58.946][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-03 20:26:58.947][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-03 20:26:58.949][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:26:58.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:26:58.958][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:58.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:58.961][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:58.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-03 20:26:58.973][biodb::testContext]
biodb.INFO [2024-05-03 20:26:58.975][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-03 20:26:58.976][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-05-03 20:26:58.978][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-03 20:26:58.979][biodb::testContext]
biodb.INFO [2024-05-03 20:26:58.993][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-03 20:26:58.995][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-03 20:26:59.002][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-03 20:26:59.003][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-03 20:26:59.005][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-03 20:26:59.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.023][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-03 20:26:59.025][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-03 20:26:59.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.037][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-03 20:26:59.039][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-03 20:26:59.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.045][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-03 20:26:59.051][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-03 20:26:59.053][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-03 20:26:59.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.058][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-03 20:26:59.059][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-03 20:26:59.069][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-03 20:26:59.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.076][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-03 20:26:59.078][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-03 20:26:59.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.099][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-03 20:26:59.101][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-03 20:26:59.102][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-03 20:26:59.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.118][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-03 20:26:59.120][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-03 20:26:59.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.135][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-03 20:26:59.137][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-03 20:26:59.139][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-03 20:26:59.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.144][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-03 20:26:59.155][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-03 20:26:59.160][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-03 20:26:59.162][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-03 20:26:59.164][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-03 20:26:59.182][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-03 20:26:59.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.188][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-03 20:26:59.200][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-03 20:26:59.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.205][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-03 20:26:59.207][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-03 20:26:59.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.227][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-03 20:26:59.228][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-03 20:26:59.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.240][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-03 20:26:59.241][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-03 20:26:59.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.246][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-03 20:26:59.248][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-03 20:26:59.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.258][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-03 20:26:59.260][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-03 20:26:59.293][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-03 20:26:59.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.299][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-03 20:26:59.300][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-03 20:26:59.302][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-03 20:26:59.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.309][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-03 20:26:59.312][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.313][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-03 20:26:59.318][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.320][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:59.321][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.323][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.324][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.326][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.336][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-03 20:26:59.338][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:59.340][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.342][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-03 20:26:59.343][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:59.345][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.352][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.354][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-03 20:26:59.354][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-03 20:26:59.354][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-03 20:26:59.354][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-03 20:26:59.354][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-03 20:26:59.356][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:59.357][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:59.359][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:59.360][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:59.361][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:59.367][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:59.368][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.370][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.371][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:59.372][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:59.374][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.375][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.384][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-03 20:26:59.387][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.389][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-03 20:26:59.390][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.392][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:59.404][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.406][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.408][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.409][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.411][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-03 20:26:59.421][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:59.424][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.426][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-03 20:26:59.427][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:59.429][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.430][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.441][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-03 20:26:59.441][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-03 20:26:59.441][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-03 20:26:59.441][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-03 20:26:59.441][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-03 20:26:59.444][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:59.446][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:59.447][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:59.449][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:59.459][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:59.461][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:59.463][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.465][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.467][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:59.475][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:59.477][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.479][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.481][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-03 20:26:59.484][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.492][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-03 20:26:59.494][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.513][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:59.515][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.517][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.526][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.528][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.529][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-03 20:26:59.531][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:59.532][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.533][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-03 20:26:59.535][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:59.547][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.548][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.550][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.552][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:59.553][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:59.554][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:59.565][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:59.567][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:59.568][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:59.570][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.571][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.573][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:59.574][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:59.580][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.582][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.584][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-03 20:26:59.587][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.588][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-03 20:26:59.597][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.599][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:26:59.600][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.602][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.604][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.605][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.610][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-03 20:26:59.612][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:26:59.613][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.615][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-03 20:26:59.616][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:26:59.618][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.619][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-03 20:26:59.631][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.632][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-03 20:26:59.634][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:59.636][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:59.637][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:26:59.638][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:26:59.647][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:26:59.649][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:26:59.651][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.653][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:26:59.656][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:26:59.657][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-03 20:26:59.666][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:26:59.668][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-03 20:26:59.670][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:26:59.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:26:59.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:26:59.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:26:59.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:26:59.930][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-03 20:26:59.933][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-03 20:26:59.935][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-03 20:26:59.946][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-03 20:26:59.949][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-03 20:26:59.951][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-03 20:26:59.954][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-03 20:26:59.966][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-03 20:26:59.969][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-03 20:26:59.971][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-03 20:26:59.982][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-03 20:26:59.986][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-03 20:26:59.989][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-03 20:27:00.000][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-03 20:27:00.003][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-03 20:27:00.006][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-03 20:27:00.009][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-03 20:27:00.017][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-03 20:27:00.020][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-03 20:27:00.023][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-03 20:27:00.034][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-03 20:27:00.037][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-03 20:27:00.040][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-03 20:27:00.052][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-03 20:27:00.056][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-03 20:27:00.059][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-03 20:27:00.069][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-03 20:27:00.072][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-03 20:27:00.075][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-03 20:27:00.087][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-03 20:27:00.091][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-03 20:27:00.094][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-03 20:27:00.102][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-03 20:27:00.106][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-03 20:27:00.109][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-03 20:27:00.112][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-03 20:27:00.122][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-03 20:27:00.125][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-03 20:27:00.128][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-03 20:27:00.137][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-03 20:27:00.140][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-03 20:27:00.143][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-03 20:27:00.145][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-03 20:27:00.155][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-03 20:27:00.158][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-03 20:27:00.161][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-03 20:27:00.171][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-03 20:27:00.175][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-03 20:27:00.178][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-03 20:27:00.210][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-03 20:27:00.214][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-03 20:27:00.217][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-03 20:27:00.226][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-03 20:27:00.229][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-03 20:27:00.231][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-03 20:27:00.242][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-03 20:27:00.246][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-03 20:27:00.248][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-03 20:27:00.258][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-03 20:27:00.261][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-03 20:27:00.264][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-03 20:27:00.266][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-03 20:27:00.277][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-03 20:27:00.280][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-03 20:27:00.282][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-03 20:27:00.292][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-03 20:27:00.295][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-03 20:27:00.297][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-03 20:27:00.300][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-03 20:27:00.312][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-03 20:27:00.315][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-03 20:27:00.317][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-03 20:27:00.328][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-03 20:27:00.330][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-03 20:27:00.333][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-03 20:27:00.335][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-03 20:27:00.346][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-03 20:27:00.349][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-03 20:27:00.352][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-03 20:27:00.354][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-03 20:27:00.360][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-03 20:27:00.362][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-03 20:27:00.364][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-03 20:27:00.367][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-03 20:27:00.370][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-03 20:27:00.372][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-03 20:27:00.373][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.390][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-03 20:27:00.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:00.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:00.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:00.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:00.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:00.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:00.756][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-03 20:27:00.787][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:27:00.797][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-03 20:27:00.800][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-03 20:27:00.803][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-03 20:27:00.805][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-03 20:27:00.815][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-03 20:27:00.817][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-03 20:27:00.819][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-03 20:27:00.821][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-03 20:27:00.823][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-03 20:27:00.832][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-03 20:27:00.835][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-03 20:27:00.838][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-03 20:27:00.841][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-03 20:27:00.853][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-03 20:27:00.856][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-03 20:27:00.858][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-03 20:27:00.858][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-03 20:27:00.858][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-03 20:27:00.860][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-03 20:27:00.865][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:27:00.867][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:27:00.869][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-03 20:27:00.870][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-03 20:27:00.872][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-03 20:27:00.873][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-03 20:27:00.883][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-03 20:27:00.883][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-03 20:27:00.885][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:27:00.887][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:27:00.917][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-03 20:27:00.920][self$setPropertyValue]
biodb.DEBUG[2024-05-03 20:27:00.923][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-03 20:27:00.933][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-03 20:27:00.936][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-03 20:27:00.939][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-03 20:27:00.949][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-03 20:27:00.955][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:27:00.966][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-03 20:27:00.969][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:27:00.973][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-03 20:27:00.975][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:27:00.982][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:27:00.985][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-03 20:27:00.987][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-03 20:27:00.989][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-03 20:27:00.989][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-03 20:27:01.000][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-03 20:27:01.002][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-03 20:27:01.004][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-03 20:27:01.006][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-03 20:27:01.008][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-03 20:27:01.021][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-03 20:27:01.024][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:27:01.026][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:27:01.039][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-03 20:27:01.042][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-03 20:27:01.045][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-03 20:27:01.055][biodb::testThat]
biodb.INFO [2024-05-03 20:27:01.058][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-05-03 20:27:01.060][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-03 20:27:01.070][biodb::testThat]
biodb.DEBUG[2024-05-03 20:27:01.075][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-03 20:27:01.078][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-05-03 20:27:01.080][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-05-03 20:27:01.095][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:01.107][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:01.111][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-03 20:27:01.114][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:01.123][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-03 20:27:01.127][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-03 20:27:01.129][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-03 20:27:01.132][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-03 20:27:01.141][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-03 20:27:01.144][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-03 20:27:01.146][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-05-03 20:27:01.196][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-05-03 20:27:01.200][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-03 20:27:01.211][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:01.214][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-03 20:27:01.227][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-05-03 20:27:01.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-03 20:27:01.235][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-05-03 20:27:01.238][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-03 20:27:01.241][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-03 20:27:01.243][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-03 20:27:01.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:27:01.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:01.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:01.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:01.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:01.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:01.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-03 20:27:01.310][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:01.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:01.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.328][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:01.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:01.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.380][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:01.383][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:01.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.399][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:01.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:01.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.419][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:27:01.421][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:27:01.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.427][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.429][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:27:01.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:27:01.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.439][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:27:01.441][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:27:01.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.445][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.447][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:27:01.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:27:01.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:27:01.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:27:01.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.469][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:27:01.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:27:01.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.504][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:01.508][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:01.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:01.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.543][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:01.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:01.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.560][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.563][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:01.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:01.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:01.583][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:01.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.596][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:01.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.610][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:01.611][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:01.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.614][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:01.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:01.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.631][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:01.633][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:01.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.645][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:01.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:01.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.664][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:27:01.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:27:01.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.669][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:27:01.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:27:01.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.686][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:27:01.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:27:01.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.699][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:27:01.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:27:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.717][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:01.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:01.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:01.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:01.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:01.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:01.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:01.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:01.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.777][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:01.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:01.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:01.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:01.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.812][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:01.814][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:01.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.817][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.819][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:01.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:01.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.831][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:27:01.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:27:01.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.843][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:27:01.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:27:01.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.852][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-03 20:27:01.862][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:01.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.865][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.867][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-03 20:27:01.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:01.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:01.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:01.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:01.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:01.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:01.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:01.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.921][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:27:01.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:27:01.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.936][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:27:01.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:27:01.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.943][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:27:01.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:27:01.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.959][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:27:01.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:27:01.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.971][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:27:01.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:27:01.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.977][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:27:01.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:27:01.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:01.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:27:01.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:27:01.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:01.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:27:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:27:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:27:02.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:27:02.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:02.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:02.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:02.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:02.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:02.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:02.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:02.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:02.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:02.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:02.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:02.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:02.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:02.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:02.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:02.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:02.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:02.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:02.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:02.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:02.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:02.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.218][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:02.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:02.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.231][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:02.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.238][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:02.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:27:02.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:27:02.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:27:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:27:02.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.270][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:27:02.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:27:02.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:27:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:27:02.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:27:02.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:27:02.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:27:02.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:27:02.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:02.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:02.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.368][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:02.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:02.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.384][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:02.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:02.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:02.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:02.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:02.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:02.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:02.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:02.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:02.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:02.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:02.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:02.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:02.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:02.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:02.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:02.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:02.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:02.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.548][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:02.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:27:02.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:27:02.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:27:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:27:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:27:02.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:27:02.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.602][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-03 20:27:02.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.636][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-03 20:27:02.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:02.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:02.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:02.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:02.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:02.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:02.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:02.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:02.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:02.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:02.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:02.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.676][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:02.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:02.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.682][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:02.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:02.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:02.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:02.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:02.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:02.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:02.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:02.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:02.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:02.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:02.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:02.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:02.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:02.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:02.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:02.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:02.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:27:02.753][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-03 20:27:02.756][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:02.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:02.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.762][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:02.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:02.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.771][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:02.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:02.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.777][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:02.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:27:02.782][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-03 20:27:02.783][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-03 20:27:02.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:27:02.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:02.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:02.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:02.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:02.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:02.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:02.809][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-05-03 20:27:02.813][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-03 20:27:02.816][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:02.819][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-03 20:27:02.822][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-05-03 20:27:02.830][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-03 20:27:02.842][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-05-03 20:27:02.844][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-03 20:27:02.846][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-03 20:27:02.848][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-03 20:27:02.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:27:02.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:02.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:02.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:02.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:02.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:02.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-03 20:27:02.920][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:02.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:02.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.927][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:02.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:02.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.945][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:02.947][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:02.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.958][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:02.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:02.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.969][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:27:02.978][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:27:02.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.983][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:02.986][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:27:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:27:02.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:02.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.002][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:27:03.004][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:27:03.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.007][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.021][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:27:03.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:27:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:27:03.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:27:03.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.049][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:27:03.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:27:03.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.067][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:03.069][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:03.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.072][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:03.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:03.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.090][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:03.092][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:03.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.095][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.104][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:03.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:03.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:03.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.124][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:03.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.143][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:03.144][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:03.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.148][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:03.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:03.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.163][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:03.165][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:03.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:03.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:03.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.185][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:27:03.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:27:03.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:27:03.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:27:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:27:03.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:27:03.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:27:03.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:27:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:03.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:03.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:03.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:03.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.257][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:03.258][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:03.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.268][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:03.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:03.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.276][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:03.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:03.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.288][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:03.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:03.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.308][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:03.309][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:03.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:03.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:03.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:27:03.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:27:03.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.356][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:27:03.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:27:03.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.374][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-03 20:27:03.380][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:03.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.385][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-03 20:27:03.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:03.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:03.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:03.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:03.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:03.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:03.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:03.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.449][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:27:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:27:03.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.457][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:27:03.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:27:03.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.464][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-03 20:27:03.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-03 20:27:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.479][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:27:03.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:27:03.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.493][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:27:03.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:27:03.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.500][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-03 20:27:03.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-03 20:27:03.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:27:03.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:27:03.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:27:03.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:27:03.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-03 20:27:03.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-03 20:27:03.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:03.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:03.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:03.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-03 20:27:03.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:03.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:03.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:03.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:03.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:03.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-03 20:27:03.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:03.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:03.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-03 20:27:03.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:03.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:03.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:03.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-03 20:27:03.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.723][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:03.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:03.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.738][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:03.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:03.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.752][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:03.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:03.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:27:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:27:03.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:27:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:27:03.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-03 20:27:03.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-03 20:27:03.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:27:03.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:27:03.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:27:03.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:27:03.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-03 20:27:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-03 20:27:03.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:03.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:03.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:03.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:03.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:03.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.890][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:03.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.905][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:03.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.918][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:03.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-03 20:27:03.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:03.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:03.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:03.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:03.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:03.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-03 20:27:03.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:03.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:03.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:03.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:03.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:03.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:03.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:04.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:04.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:04.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:04.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:04.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:04.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-03 20:27:04.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.052][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:04.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:04.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.060][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:04.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:04.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-03 20:27:04.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:27:04.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:27:04.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:27:04.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:27:04.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-03 20:27:04.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-03 20:27:04.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.170][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-03 20:27:04.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:04.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:04.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:04.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:04.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:04.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-03 20:27:04.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:04.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.243][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-03 20:27:04.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-03 20:27:04.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:04.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:04.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:04.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:04.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:04.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:04.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:04.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:04.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-03 20:27:04.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-03 20:27:04.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.344][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:04.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:04.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.365][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:04.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:04.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:04.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:04.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.398][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:04.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-03 20:27:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:04.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:04.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:04.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:04.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:04.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:04.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:04.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:04.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:04.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:04.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-03 20:27:04.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-03 20:27:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:27:04.509][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-05-03 20:27:04.511][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.561][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.589][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:27:04.632][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-03 20:27:04.634][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-05-03 20:27:04.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:27:04.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:04.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:04.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:04.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:04.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:04.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:04.681][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-03 20:27:04.684][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-05-03 20:27:04.686][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-05-03 20:27:04.692][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:04.696][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:04.700][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-03 20:27:04.715][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:04.718][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-03 20:27:04.730][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-03 20:27:04.735][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-03 20:27:04.738][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-03 20:27:04.740][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-03 20:27:04.743][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-03 20:27:04.752][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-03 20:27:04.757][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.772][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.798][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.817][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.844][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.853][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.862][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:27:04.871][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-03 20:27:04.872][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-03 20:27:04.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:27:04.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:04.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:04.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:04.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:04.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:04.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-03 20:27:04.920][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.943][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.962][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.977][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:04.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:04.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:04.994][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:04.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.038][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.060][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:27:05.078][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-05-03 20:27:05.087][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-03 20:27:05.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:27:05.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:05.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:05.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:05.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:05.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:05.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-03 20:27:05.130][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-03 20:27:05.145][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-05-03 20:27:05.152][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-05-03 20:27:05.156][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:05.159][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:05.175][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-03 20:27:05.178][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-03 20:27:05.181][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-03 20:27:05.186][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-03 20:27:05.189][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-03 20:27:05.190][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-03 20:27:05.192][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-03 20:27:05.201][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-03 20:27:05.203][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-03 20:27:05.206][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.215][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.223][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.236][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.247][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.265][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.292][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:27:05.307][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-05-03 20:27:05.309][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-05-03 20:27:05.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:27:05.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:05.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:05.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:05.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:05.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:05.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-03 20:27:05.360][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.368][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.373][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.383][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.389][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.395][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-03 20:27:05.401][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-03 20:27:05.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-03 20:27:05.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-03 20:27:05.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-03 20:27:05.413][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-03 20:27:05.416][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-03 20:27:05.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-03 20:27:05.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:05.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:05.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:05.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:05.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:05.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-03 20:27:05.450][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-03 20:27:05.456][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-03 20:27:05.458][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-03 20:27:05.459][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-03 20:27:05.461][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-03 20:27:05.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-03 20:27:05.463][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-03 20:27:05.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-03 20:27:05.466][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-03 20:27:05.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
 15.026   0.869  32.367 

Example timings