Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-04 11:41:09 -0400 (Sat, 04 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4753 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" | 4486 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" | 4519 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4479 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2032/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
spatialDE 1.10.0 (landing page) Gabriele Sales
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the spatialDE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spatialDE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: spatialDE |
Version: 1.10.0 |
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings spatialDE_1.10.0.tar.gz |
StartedAt: 2024-05-04 12:14:32 -0000 (Sat, 04 May 2024) |
EndedAt: 2024-05-04 12:20:22 -0000 (Sat, 04 May 2024) |
EllapsedTime: 350.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: spatialDE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings spatialDE_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/spatialDE.Rcheck’ * using R version 4.4.0 beta (2024-04-15 r86425) * using platform: aarch64-unknown-linux-gnu * R was compiled by gcc (GCC) 10.3.1 GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘spatialDE/DESCRIPTION’ ... OK * this is package ‘spatialDE’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘spatialDE’ can be installed ... NOTE Found the following notes/warnings: Non-staged installation was used See ‘/home/biocbuild/bbs-3.19-bioc/meat/spatialDE.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed spatial_patterns 23.896 0.032 23.976 FSV_sig 6.803 0.612 8.645 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.19-bioc/meat/spatialDE.Rcheck/00check.log’ for details.
spatialDE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL spatialDE ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’ * installing *source* package ‘spatialDE’ ... ** using non-staged installation via StagedInstall field ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (spatialDE)
spatialDE.Rcheck/tests/testthat.Rout
R version 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(spatialDE) > > test_check("spatialDE") Loading required package: SingleCellExperiment Loading required package: SummarizedExperiment Loading required package: MatrixGenerics Loading required package: matrixStats Attaching package: 'MatrixGenerics' The following objects are masked from 'package:matrixStats': colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, colCounts, colCummaxs, colCummins, colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, colWeightedMeans, colWeightedMedians, colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, rowWeightedMads, rowWeightedMeans, rowWeightedMedians, rowWeightedSds, rowWeightedVars Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Attaching package: 'S4Vectors' The following object is masked from 'package:utils': findMatches The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: IRanges Loading required package: GenomeInfoDb Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Attaching package: 'Biobase' The following object is masked from 'package:MatrixGenerics': rowMedians The following objects are masked from 'package:matrixStats': anyMissing, rowMedians Models: 0%| | 0/10 [00:00<?, ?it/s] 0%| | 0/100 [00:00<?, ?it/s][A 26%|██▌ | 26/100 [00:00<00:00, 253.08it/s][A 52%|█████▏ | 52/100 [00:00<00:00, 249.15it/s][A 77%|███████▋ | 77/100 [00:00<00:00, 248.42it/s][A [A Models: 10%|█ | 1/10 [00:00<00:03, 2.42it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 179.27it/s][A 37%|███▋ | 37/100 [00:00<00:00, 172.90it/s][A 56%|█████▌ | 56/100 [00:00<00:00, 176.95it/s][A 74%|███████▍ | 74/100 [00:00<00:00, 173.43it/s][A 92%|█████████▏| 92/100 [00:00<00:00, 172.85it/s][A [A Models: 20%|██ | 2/10 [00:00<00:04, 1.95it/s] 0%| | 0/100 [00:00<?, ?it/s][A 17%|█▋ | 17/100 [00:00<00:00, 167.42it/s][A 34%|███▍ | 34/100 [00:00<00:00, 161.15it/s][A 51%|█████ | 51/100 [00:00<00:00, 160.14it/s][A 68%|██████▊ | 68/100 [00:00<00:00, 156.27it/s][A 84%|████████▍ | 84/100 [00:00<00:00, 155.18it/s][A [A Models: 30%|███ | 3/10 [00:01<00:03, 1.76it/s] 0%| | 0/100 [00:00<?, ?it/s][A 16%|█▌ | 16/100 [00:00<00:00, 155.70it/s][A 32%|███▏ | 32/100 [00:00<00:00, 152.56it/s][A 48%|████▊ | 48/100 [00:00<00:00, 153.31it/s][A 64%|██████▍ | 64/100 [00:00<00:00, 152.54it/s][A 80%|████████ | 80/100 [00:00<00:00, 153.02it/s][A 96%|█████████▌| 96/100 [00:00<00:00, 153.27it/s][A [A Models: 40%|████ | 4/10 [00:02<00:03, 1.66it/s] 0%| | 0/100 [00:00<?, ?it/s][A 15%|█▌ | 15/100 [00:00<00:00, 149.37it/s][A 30%|███ | 30/100 [00:00<00:00, 148.69it/s][A 45%|████▌ | 45/100 [00:00<00:00, 149.19it/s][A 61%|██████ | 61/100 [00:00<00:00, 151.87it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 156.75it/s][A 94%|█████████▍| 94/100 [00:00<00:00, 153.02it/s][A [A Models: 50%|█████ | 5/10 [00:02<00:03, 1.61it/s] 0%| | 0/100 [00:00<?, ?it/s][A 17%|█▋ | 17/100 [00:00<00:00, 161.35it/s][A 34%|███▍ | 34/100 [00:00<00:00, 158.34it/s][A 50%|█████ | 50/100 [00:00<00:00, 157.24it/s][A 67%|██████▋ | 67/100 [00:00<00:00, 159.07it/s][A 83%|████████▎ | 83/100 [00:00<00:00, 157.87it/s][A 99%|█████████▉| 99/100 [00:00<00:00, 157.04it/s][A [A Models: 60%|██████ | 6/10 [00:03<00:02, 1.59it/s] 0%| | 0/100 [00:00<?, ?it/s][A 16%|█▌ | 16/100 [00:00<00:00, 158.99it/s][A 32%|███▏ | 32/100 [00:00<00:00, 157.74it/s][A 48%|████▊ | 48/100 [00:00<00:00, 158.32it/s][A 65%|██████▌ | 65/100 [00:00<00:00, 160.30it/s][A 82%|████████▏ | 82/100 [00:00<00:00, 160.10it/s][A 99%|█████████▉| 99/100 [00:00<00:00, 157.76it/s][A [A Models: 70%|███████ | 7/10 [00:04<00:01, 1.59it/s] 0%| | 0/100 [00:00<?, ?it/s][A 17%|█▋ | 17/100 [00:00<00:00, 158.46it/s][A 33%|███▎ | 33/100 [00:00<00:00, 156.11it/s][A 49%|████▉ | 49/100 [00:00<00:00, 157.74it/s][A 65%|██████▌ | 65/100 [00:00<00:00, 157.49it/s][A 82%|████████▏ | 82/100 [00:00<00:00, 158.57it/s][A 98%|█████████▊| 98/100 [00:00<00:00, 157.78it/s][A [A Models: 80%|████████ | 8/10 [00:04<00:01, 1.58it/s] 0%| | 0/100 [00:00<?, ?it/s][A 10%|█ | 10/100 [00:00<00:01, 81.68it/s][A 27%|██▋ | 27/100 [00:00<00:00, 126.02it/s][A 44%|████▍ | 44/100 [00:00<00:00, 142.44it/s][A 61%|██████ | 61/100 [00:00<00:00, 150.20it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 156.92it/s][A 94%|█████████▍| 94/100 [00:00<00:00, 155.92it/s][A [A Models: 90%|█████████ | 9/10 [00:05<00:00, 1.55it/s] 0%| | 0/100 [00:00<?, ?it/s][A 18%|█▊ | 18/100 [00:00<00:00, 171.41it/s][A 36%|███▌ | 36/100 [00:00<00:00, 169.62it/s][A 54%|█████▍ | 54/100 [00:00<00:00, 172.49it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 173.93it/s][A 90%|█████████ | 90/100 [00:00<00:00, 173.71it/s][A [A Models: 100%|██████████| 10/10 [00:06<00:00, 1.59it/s] Models: 100%|██████████| 10/10 [00:06<00:00, 1.64it/s] Models: 0%| | 0/10 [00:00<?, ?it/s] 0%| | 0/100 [00:00<?, ?it/s][A 27%|██▋ | 27/100 [00:00<00:00, 261.24it/s][A 54%|█████▍ | 54/100 [00:00<00:00, 235.48it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 231.41it/s][A [A Models: 10%|█ | 1/10 [00:00<00:03, 2.33it/s] 0%| | 0/100 [00:00<?, ?it/s][A 22%|██▏ | 22/100 [00:00<00:00, 218.70it/s][A 44%|████▍ | 44/100 [00:00<00:00, 178.29it/s][A 63%|██████▎ | 63/100 [00:00<00:00, 172.99it/s][A 81%|████████ | 81/100 [00:00<00:00, 173.64it/s][A 99%|█████████▉| 99/100 [00:00<00:00, 171.28it/s][A [A Models: 20%|██ | 2/10 [00:01<00:04, 1.94it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 207.33it/s][A 42%|████▏ | 42/100 [00:00<00:00, 168.13it/s][A 60%|██████ | 60/100 [00:00<00:00, 162.56it/s][A 77%|███████▋ | 77/100 [00:00<00:00, 163.57it/s][A 94%|█████████▍| 94/100 [00:00<00:00, 160.92it/s][A [A Models: 30%|███ | 3/10 [00:01<00:03, 1.79it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 198.50it/s][A 40%|████ | 40/100 [00:00<00:00, 167.71it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 163.05it/s][A 75%|███████▌ | 75/100 [00:00<00:00, 162.11it/s][A 92%|█████████▏| 92/100 [00:00<00:00, 159.84it/s][A [A Models: 40%|████ | 4/10 [00:02<00:03, 1.72it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 198.05it/s][A 40%|████ | 40/100 [00:00<00:00, 160.53it/s][A 57%|█████▋ | 57/100 [00:00<00:00, 157.37it/s][A 73%|███████▎ | 73/100 [00:00<00:00, 157.56it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 153.95it/s][A [A Models: 50%|█████ | 5/10 [00:02<00:03, 1.67it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 199.13it/s][A 41%|████ | 41/100 [00:00<00:00, 169.05it/s][A 59%|█████▉ | 59/100 [00:00<00:00, 162.42it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 161.89it/s][A 93%|█████████▎| 93/100 [00:00<00:00, 158.33it/s][A [A Models: 60%|██████ | 6/10 [00:03<00:02, 1.65it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 198.81it/s][A 40%|████ | 40/100 [00:00<00:00, 166.83it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 165.54it/s][A 75%|███████▌ | 75/100 [00:00<00:00, 163.91it/s][A 92%|█████████▏| 92/100 [00:00<00:00, 163.64it/s][A [A Models: 70%|███████ | 7/10 [00:04<00:01, 1.65it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 193.33it/s][A 40%|████ | 40/100 [00:00<00:00, 169.02it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 165.66it/s][A 75%|███████▌ | 75/100 [00:00<00:00, 162.81it/s][A 92%|█████████▏| 92/100 [00:00<00:00, 161.63it/s][A [A Models: 80%|████████ | 8/10 [00:04<00:01, 1.65it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 189.31it/s][A 38%|███▊ | 38/100 [00:00<00:00, 167.66it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 167.93it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 166.39it/s][A 90%|█████████ | 90/100 [00:00<00:00, 170.27it/s][A [A Models: 90%|█████████ | 9/10 [00:05<00:00, 1.66it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 202.85it/s][A 42%|████▏ | 42/100 [00:00<00:00, 179.78it/s][A 61%|██████ | 61/100 [00:00<00:00, 177.73it/s][A 79%|███████▉ | 79/100 [00:00<00:00, 176.36it/s][A 97%|█████████▋| 97/100 [00:00<00:00, 177.33it/s][A [A Models: 100%|██████████| 10/10 [00:05<00:00, 1.70it/s] Models: 100%|██████████| 10/10 [00:05<00:00, 1.71it/s] /home/biocbuild/.cache/R/basilisk/1.16.0/spatialDE/1.10.0/env/lib/python3.9/site-packages/pandas/core/internals/blocks.py:351: RuntimeWarning: invalid value encountered in log result = func(self.values, **kwargs) Models: 0%| | 0/10 [00:00<?, ?it/s] 0%| | 0/100 [00:00<?, ?it/s][A 26%|██▌ | 26/100 [00:00<00:00, 250.00it/s][A 52%|█████▏ | 52/100 [00:00<00:00, 236.02it/s][A 77%|███████▋ | 77/100 [00:00<00:00, 240.12it/s][A [A Models: 10%|█ | 1/10 [00:00<00:03, 2.41it/s] 0%| | 0/100 [00:00<?, ?it/s][A 22%|██▏ | 22/100 [00:00<00:00, 212.38it/s][A 44%|████▍ | 44/100 [00:00<00:00, 197.13it/s][A 64%|██████▍ | 64/100 [00:00<00:00, 191.11it/s][A 84%|████████▍ | 84/100 [00:00<00:00, 183.67it/s][A [A Models: 20%|██ | 2/10 [00:00<00:03, 2.06it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 199.98it/s][A 41%|████ | 41/100 [00:00<00:00, 175.93it/s][A 59%|█████▉ | 59/100 [00:00<00:00, 170.25it/s][A 77%|███████▋ | 77/100 [00:00<00:00, 170.76it/s][A 95%|█████████▌| 95/100 [00:00<00:00, 170.69it/s][A [A Models: 30%|███ | 3/10 [00:01<00:03, 1.89it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 189.64it/s][A 38%|███▊ | 38/100 [00:00<00:00, 161.53it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 160.39it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 162.60it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 161.12it/s][A [A Models: 40%|████ | 4/10 [00:02<00:03, 1.78it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 188.70it/s][A 38%|███▊ | 38/100 [00:00<00:00, 167.65it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 164.07it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 163.53it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 161.39it/s][A [A Models: 50%|█████ | 5/10 [00:02<00:02, 1.73it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 183.29it/s][A 38%|███▊ | 38/100 [00:00<00:00, 161.52it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 157.80it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 159.47it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 158.53it/s][A [A Models: 60%|██████ | 6/10 [00:03<00:02, 1.68it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 181.47it/s][A 38%|███▊ | 38/100 [00:00<00:00, 168.39it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 165.60it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 165.74it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 163.84it/s][A [A Models: 70%|███████ | 7/10 [00:03<00:01, 1.67it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 184.96it/s][A 38%|███▊ | 38/100 [00:00<00:00, 169.56it/s][A 56%|█████▌ | 56/100 [00:00<00:00, 168.56it/s][A 74%|███████▍ | 74/100 [00:00<00:00, 169.65it/s][A 91%|█████████ | 91/100 [00:00<00:00, 169.12it/s][A [A Models: 80%|████████ | 8/10 [00:04<00:01, 1.68it/s] 0%| | 0/100 [00:00<?, ?it/s][A 22%|██▏ | 22/100 [00:00<00:00, 208.05it/s][A 43%|████▎ | 43/100 [00:00<00:00, 184.20it/s][A 62%|██████▏ | 62/100 [00:00<00:00, 180.48it/s][A 81%|████████ | 81/100 [00:00<00:00, 179.53it/s][A 100%|██████████| 100/100 [00:00<00:00, 179.81it/s][A [A Models: 90%|█████████ | 9/10 [00:05<00:00, 1.72it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 197.89it/s][A 40%|████ | 40/100 [00:00<00:00, 197.99it/s][A 60%|██████ | 60/100 [00:00<00:00, 195.04it/s][A 80%|████████ | 80/100 [00:00<00:00, 191.59it/s][A 100%|██████████| 100/100 [00:00<00:00, 191.98it/s][A [A Models: 100%|██████████| 10/10 [00:05<00:00, 1.78it/s] Models: 100%|██████████| 10/10 [00:05<00:00, 1.77it/s] Models: 0%| | 0/10 [00:00<?, ?it/s] 0%| | 0/100 [00:00<?, ?it/s][A 27%|██▋ | 27/100 [00:00<00:00, 258.30it/s][A 53%|█████▎ | 53/100 [00:00<00:00, 248.56it/s][A 79%|███████▉ | 79/100 [00:00<00:00, 250.05it/s][A [A Models: 10%|█ | 1/10 [00:00<00:03, 2.48it/s] 0%| | 0/100 [00:00<?, ?it/s][A 22%|██▏ | 22/100 [00:00<00:00, 210.46it/s][A 44%|████▍ | 44/100 [00:00<00:00, 195.25it/s][A 64%|██████▍ | 64/100 [00:00<00:00, 192.66it/s][A 84%|████████▍ | 84/100 [00:00<00:00, 189.33it/s][A [A Models: 20%|██ | 2/10 [00:00<00:03, 2.11it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 207.31it/s][A 42%|████▏ | 42/100 [00:00<00:00, 185.95it/s][A 61%|██████ | 61/100 [00:00<00:00, 173.78it/s][A 79%|███████▉ | 79/100 [00:00<00:00, 171.79it/s][A 97%|█████████▋| 97/100 [00:00<00:00, 173.98it/s][A [A Models: 30%|███ | 3/10 [00:01<00:03, 1.93it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 191.70it/s][A 40%|████ | 40/100 [00:00<00:00, 171.21it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 166.98it/s][A 75%|███████▌ | 75/100 [00:00<00:00, 167.27it/s][A 92%|█████████▏| 92/100 [00:00<00:00, 164.44it/s][A [A Models: 40%|████ | 4/10 [00:02<00:03, 1.82it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 188.33it/s][A 38%|███▊ | 38/100 [00:00<00:00, 167.46it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 165.52it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 164.81it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 162.20it/s][A [A Models: 50%|█████ | 5/10 [00:02<00:02, 1.75it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 189.39it/s][A 38%|███▊ | 38/100 [00:00<00:00, 167.66it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 164.42it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 163.89it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 161.49it/s][A [A Models: 60%|██████ | 6/10 [00:03<00:02, 1.72it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 192.10it/s][A 40%|████ | 40/100 [00:00<00:00, 177.47it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 170.55it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 169.50it/s][A 93%|█████████▎| 93/100 [00:00<00:00, 169.32it/s][A [A Models: 70%|███████ | 7/10 [00:03<00:01, 1.71it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 194.13it/s][A 40%|████ | 40/100 [00:00<00:00, 175.31it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 168.23it/s][A 75%|███████▌ | 75/100 [00:00<00:00, 168.84it/s][A 92%|█████████▏| 92/100 [00:00<00:00, 167.85it/s][A [A Models: 80%|████████ | 8/10 [00:04<00:01, 1.71it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 199.76it/s][A 41%|████ | 41/100 [00:00<00:00, 181.42it/s][A 60%|██████ | 60/100 [00:00<00:00, 172.49it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 172.61it/s][A 96%|█████████▌| 96/100 [00:00<00:00, 171.07it/s][A [A Models: 90%|█████████ | 9/10 [00:05<00:00, 1.71it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 186.18it/s][A 38%|███▊ | 38/100 [00:00<00:00, 186.16it/s][A 57%|█████▋ | 57/100 [00:00<00:00, 185.99it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 185.88it/s][A 95%|█████████▌| 95/100 [00:00<00:00, 184.86it/s][A [A Models: 100%|██████████| 10/10 [00:05<00:00, 1.75it/s] Models: 100%|██████████| 10/10 [00:05<00:00, 1.78it/s] Models: 0%| | 0/10 [00:00<?, ?it/s] 0%| | 0/100 [00:00<?, ?it/s][A 26%|██▌ | 26/100 [00:00<00:00, 256.24it/s][A 52%|█████▏ | 52/100 [00:00<00:00, 245.29it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 250.29it/s][A [A Models: 10%|█ | 1/10 [00:00<00:03, 2.51it/s] 0%| | 0/100 [00:00<?, ?it/s][A 22%|██▏ | 22/100 [00:00<00:00, 217.70it/s][A 44%|████▍ | 44/100 [00:00<00:00, 197.25it/s][A 64%|██████▍ | 64/100 [00:00<00:00, 189.52it/s][A 84%|████████▍ | 84/100 [00:00<00:00, 185.11it/s][A [A Models: 20%|██ | 2/10 [00:00<00:03, 2.10it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 199.73it/s][A 40%|████ | 40/100 [00:00<00:00, 176.48it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 169.65it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 169.25it/s][A 93%|█████████▎| 93/100 [00:00<00:00, 168.46it/s][A [A Models: 30%|███ | 3/10 [00:01<00:03, 1.90it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 192.01it/s][A 40%|████ | 40/100 [00:00<00:00, 168.73it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 164.71it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 166.89it/s][A 93%|█████████▎| 93/100 [00:00<00:00, 163.86it/s][A [A Models: 40%|████ | 4/10 [00:02<00:03, 1.79it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 186.72it/s][A 38%|███▊ | 38/100 [00:00<00:00, 166.26it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 162.81it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 162.21it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 161.62it/s][A [A Models: 50%|█████ | 5/10 [00:02<00:02, 1.73it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 185.75it/s][A 38%|███▊ | 38/100 [00:00<00:00, 165.95it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 162.64it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 161.89it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 160.01it/s][A [A Models: 60%|██████ | 6/10 [00:03<00:02, 1.70it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 184.77it/s][A 38%|███▊ | 38/100 [00:00<00:00, 167.64it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 165.78it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 164.96it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 161.22it/s][A [A Models: 70%|███████ | 7/10 [00:03<00:01, 1.68it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 189.13it/s][A 39%|███▉ | 39/100 [00:00<00:00, 169.73it/s][A 57%|█████▋ | 57/100 [00:00<00:00, 162.89it/s][A 74%|███████▍ | 74/100 [00:00<00:00, 162.77it/s][A 91%|█████████ | 91/100 [00:00<00:00, 162.33it/s][A [A Models: 80%|████████ | 8/10 [00:04<00:01, 1.67it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 199.31it/s][A 40%|████ | 40/100 [00:00<00:00, 177.24it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 169.76it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 171.99it/s][A 94%|█████████▍| 94/100 [00:00<00:00, 172.44it/s][A [A Models: 90%|█████████ | 9/10 [00:05<00:00, 1.68it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 191.67it/s][A 40%|████ | 40/100 [00:00<00:00, 191.16it/s][A 60%|██████ | 60/100 [00:00<00:00, 188.59it/s][A 79%|███████▉ | 79/100 [00:00<00:00, 185.05it/s][A 98%|█████████▊| 98/100 [00:00<00:00, 184.84it/s][A [A Models: 100%|██████████| 10/10 [00:05<00:00, 1.73it/s] Models: 100%|██████████| 10/10 [00:05<00:00, 1.76it/s] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ] > > proc.time() user system elapsed 77.568 1.289 78.836
spatialDE.Rcheck/spatialDE-Ex.timings
name | user | system | elapsed | |
FSV_sig | 6.803 | 0.612 | 8.645 | |
mockSVG | 0.408 | 0.035 | 0.451 | |
modelSearch | 2.798 | 0.079 | 2.884 | |
model_search | 2.231 | 0.039 | 2.276 | |
multiGenePlots | 3.308 | 0.099 | 3.414 | |
regress_out | 0.225 | 0.000 | 0.225 | |
run | 1.170 | 0.008 | 1.180 | |
spatialDE | 1.360 | 0.068 | 1.431 | |
spatialPatterns | 1.335 | 0.028 | 1.367 | |
spatial_patterns | 23.896 | 0.032 | 23.976 | |
stabilize | 0.187 | 0.012 | 0.199 | |