Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-05-04 11:40:16 -0400 (Sat, 04 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4753
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4486
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4519
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4479
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 134/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
basilisk 1.16.0  (landing page)
Aaron Lun
Snapshot Date: 2024-05-03 14:00:19 -0400 (Fri, 03 May 2024)
git_url: https://git.bioconductor.org/packages/basilisk
git_branch: RELEASE_3_19
git_last_commit: 0a27ae6
git_last_commit_date: 2024-04-30 11:20:50 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    TIMEOUT    OK  
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

CHECK results for basilisk on kunpeng2


To the developers/maintainers of the basilisk package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: basilisk
Version: 1.16.0
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings basilisk_1.16.0.tar.gz
StartedAt: 2024-05-04 05:04:07 -0000 (Sat, 04 May 2024)
EndedAt: 2024-05-04 05:32:10 -0000 (Sat, 04 May 2024)
EllapsedTime: 1682.8 seconds
RetCode: 0
Status:   OK  
CheckDir: basilisk.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings basilisk_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
basiliskStart          190.881 14.957 210.725
createLocalBasiliskEnv  94.155  7.250 105.581
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/00check.log’
for details.


Installation output

basilisk.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL basilisk
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’
* installing *source* package ‘basilisk’ ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (basilisk)

Tests output

basilisk.Rcheck/tests/testthat.Rout


R version 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_6
  libgomp            conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_6
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
  libzlib            conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5
  ncurses            conda-forge/linux-aarch64::ncurses-6.4.20240210-h0425590_0
  openssl            conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/linux-aarch64::python-3.9.12-h5016f1d_1_cpython
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/linux-aarch64::sqlite-3.45.3-h3b3482f_0
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - pandas=1.4.3
    - python-dateutil=2.8.2
    - python=3.9.12
    - pytz=2022.2.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-aarch64::libblas-3.9.0-22_linuxaarch64_openblas
  libcblas           conda-forge/linux-aarch64::libcblas-3.9.0-22_linuxaarch64_openblas
  libgfortran-ng     conda-forge/linux-aarch64::libgfortran-ng-13.2.0-he9431aa_6
  libgfortran5       conda-forge/linux-aarch64::libgfortran5-13.2.0-h87d9d71_6
  liblapack          conda-forge/linux-aarch64::liblapack-3.9.0-22_linuxaarch64_openblas
  libopenblas        conda-forge/linux-aarch64::libopenblas-0.3.27-pthreads_h5a5ec62_0
  libstdcxx-ng       conda-forge/linux-aarch64::libstdcxx-ng-13.2.0-h3f4de04_6
  numpy              conda-forge/linux-aarch64::numpy-1.26.4-py39h91c28bb_0
  pandas             conda-forge/linux-aarch64::pandas-1.4.3-py39h63591b6_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
  python_abi         conda-forge/linux-aarch64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_6
  libgomp            conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_6
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
  libzlib            conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5
  ncurses            conda-forge/linux-aarch64::ncurses-6.4.20240210-h0425590_0
  openssl            conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/linux-aarch64::python-3.9.12-h5016f1d_1_cpython
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/linux-aarch64::sqlite-3.45.3-h3b3482f_0
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - pandas=1.4.2
    - python-dateutil=2.8.1
    - python=3.9.12
    - pytz=2022.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-aarch64::libblas-3.9.0-22_linuxaarch64_openblas
  libcblas           conda-forge/linux-aarch64::libcblas-3.9.0-22_linuxaarch64_openblas
  libgfortran-ng     conda-forge/linux-aarch64::libgfortran-ng-13.2.0-he9431aa_6
  libgfortran5       conda-forge/linux-aarch64::libgfortran5-13.2.0-h87d9d71_6
  liblapack          conda-forge/linux-aarch64::liblapack-3.9.0-22_linuxaarch64_openblas
  libopenblas        conda-forge/linux-aarch64::libopenblas-0.3.27-pthreads_h5a5ec62_0
  libstdcxx-ng       conda-forge/linux-aarch64::libstdcxx-ng-13.2.0-h3f4de04_6
  numpy              conda-forge/linux-aarch64::numpy-1.26.4-py39h91c28bb_0
  pandas             conda-forge/linux-aarch64::pandas-1.4.2-py39h63591b6_2
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  python_abi         conda-forge/linux-aarch64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_6
  libgomp            conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_6
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
  libzlib            conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5
  ncurses            conda-forge/linux-aarch64::ncurses-6.4.20240210-h0425590_0
  openssl            conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/linux-aarch64::python-3.9.12-h5016f1d_1_cpython
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/linux-aarch64::sqlite-3.45.3-h3b3482f_0
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python-dateutil=2.8.1
    - python=3.9.12
    - pytz=2022.1


The following NEW packages will be INSTALLED:

  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  pytz               conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting pandas==1.4.2
  Using cached pandas-1.4.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (12 kB)
Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.9/site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.9/site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.19.2 (from pandas==1.4.2)
  Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (62 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.9/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.16.0)
Using cached pandas-1.4.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (11.0 MB)
Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (14.2 MB)
Installing collected packages: numpy, pandas
Successfully installed numpy-1.26.4 pandas-1.4.2
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_6
  libgomp            conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_6
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
  libzlib            conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5
  ncurses            conda-forge/linux-aarch64::ncurses-6.4.20240210-h0425590_0
  openssl            conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/linux-aarch64::python-3.9.12-h5016f1d_1_cpython
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/linux-aarch64::sqlite-3.45.3-h3b3482f_0
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Processing /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/basilisk/example/inst/test_dummy
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
  Building wheel for test_dummy (setup.py): started
  Building wheel for test_dummy (setup.py): finished with status 'done'
  Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1281 sha256=dcea4a6a8943211a96abc4bd6e1dcc233f2fa7b9907054bb378b329f05a18b9b
  Stored in directory: /home/biocbuild/tmp/pip-ephem-wheel-cache-qa9bt83j/wheels/06/77/17/10a44b4cd623cf5fa4078e6c5903b0db4b18032359b798ee5a
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_6
  libgomp            conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_6
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
  libzlib            conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5
  ncurses            conda-forge/linux-aarch64::ncurses-6.4.20240210-h0425590_0
  openssl            conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/linux-aarch64::python-3.9.12-h5016f1d_1_cpython
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/linux-aarch64::sqlite-3.45.3-h3b3482f_0
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - whheeeeeeeeeeeeeeeeee=0.0.1

Current channels:

  - https://conda.anaconda.org/conda-forge/linux-aarch64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://repo.anaconda.com/pkgs/main/linux-aarch64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/linux-aarch64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.


trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-Linux-aarch64.sh'
Content type 'application/x-sh' length 78905633 bytes (75.3 MB)
==================================================
downloaded 75.3 MB

PREFIX=/home/biocbuild/tmp/Rtmpy7nSam/file2dbad74997b79/1.16.0/0
Unpacking payload ...

  0%|          | 0/40 [00:00<?, ?it/s]
Extracting : colorama-0.4.4-pyhd3eb1b0_0.conda:   0%|          | 0/40 [00:00<?, ?it/s]
Extracting : colorama-0.4.4-pyhd3eb1b0_0.conda:   2%|▎         | 1/40 [00:00<00:08,  4.69it/s]
Extracting : urllib3-1.26.8-pyhd3eb1b0_0.conda:   2%|▎         | 1/40 [00:00<00:08,  4.69it/s]
Extracting : ruamel_yaml-0.15.100-py39h2f4d8fa_0.conda:   5%|▌         | 2/40 [00:00<00:08,  4.69it/s]
Extracting : tk-8.6.11-h241ca14_0.conda:   8%|▊         | 3/40 [00:00<00:07,  4.69it/s]               
Extracting : conda-4.12.0-py39hd43f75c_0.conda:  10%|█         | 4/40 [00:00<00:07,  4.69it/s]
Extracting : conda-4.12.0-py39hd43f75c_0.conda:  12%|█▎        | 5/40 [00:00<00:03, 10.50it/s]
Extracting : _libgcc_mutex-0.1-main.conda:  12%|█▎        | 5/40 [00:00<00:03, 10.50it/s]     
Extracting : conda-package-handling-1.8.1-py39h2f4d8fa_0.conda:  15%|█▌        | 6/40 [00:00<00:03, 10.50it/s]
Extracting : python-3.9.12-hc137634_0.conda:  18%|█▊        | 7/40 [00:00<00:03, 10.50it/s]                   
Extracting : python-3.9.12-hc137634_0.conda:  20%|██        | 8/40 [00:00<00:02, 15.19it/s]
Extracting : cffi-1.15.0-py39h9a3cfec_1.conda:  20%|██        | 8/40 [00:00<00:02, 15.19it/s]
Extracting : six-1.16.0-pyhd3eb1b0_1.conda:  22%|██▎       | 9/40 [00:00<00:02, 15.19it/s]   
Extracting : wheel-0.37.1-pyhd3eb1b0_0.conda:  25%|██▌       | 10/40 [00:00<00:01, 15.19it/s]
Extracting : _openmp_mutex-5.1-51_gnu.conda:  28%|██▊       | 11/40 [00:00<00:01, 15.19it/s] 
Extracting : conda-content-trust-0.1.1-pyhd3eb1b0_0.conda:  30%|███       | 12/40 [00:00<00:01, 15.19it/s]
Extracting : ld_impl_linux-aarch64-2.36.1-h0ab8de2_3.conda:  32%|███▎      | 13/40 [00:00<00:01, 15.19it/s]
Extracting : idna-3.3-pyhd3eb1b0_0.conda:  35%|███▌      | 14/40 [00:00<00:01, 15.19it/s]                  
Extracting : certifi-2021.10.8-py39hd43f75c_2.conda:  38%|███▊      | 15/40 [00:00<00:01, 15.19it/s]
Extracting : pycosat-0.6.3-py39hfd63f10_2.conda:  40%|████      | 16/40 [00:00<00:01, 15.19it/s]    
Extracting : libgcc-ng-10.2.0-h1234567_51.conda:  42%|████▎     | 17/40 [00:00<00:01, 15.19it/s]
Extracting : brotlipy-0.7.0-py39hfd63f10_1002.conda:  45%|████▌     | 18/40 [00:00<00:01, 15.19it/s]
Extracting : ca-certificates-2022.3.29-hd43f75c_1.conda:  48%|████▊     | 19/40 [00:00<00:01, 15.19it/s]
Extracting : charset-normalizer-2.0.4-pyhd3eb1b0_0.conda:  50%|█████     | 20/40 [00:00<00:01, 15.19it/s]
Extracting : zlib-1.2.12-h2f4d8fa_1.conda:  52%|█████▎    | 21/40 [00:00<00:01, 15.19it/s]               
Extracting : readline-8.1.2-h2f4d8fa_1.conda:  55%|█████▌    | 22/40 [00:00<00:01, 15.19it/s]
Extracting : tqdm-4.63.0-pyhd3eb1b0_0.conda:  57%|█████▊    | 23/40 [00:00<00:01, 15.19it/s] 
Extracting : cryptography-36.0.0-py39h3d58568_0.conda:  60%|██████    | 24/40 [00:00<00:01, 15.19it/s]
Extracting : xz-5.2.5-hfd63f10_1.conda:  62%|██████▎   | 25/40 [00:00<00:00, 15.19it/s]               
Extracting : ncurses-6.3-h2f4d8fa_2.conda:  65%|██████▌   | 26/40 [00:00<00:00, 15.19it/s]
Extracting : openssl-1.1.1n-h2f4d8fa_0.conda:  68%|██████▊   | 27/40 [00:00<00:00, 15.19it/s]
Extracting : pip-21.2.4-py39hd43f75c_0.conda:  70%|███████   | 28/40 [00:00<00:00, 15.19it/s]
Extracting : yaml-0.2.5-hfd63f10_0.conda:  72%|███████▎  | 29/40 [00:00<00:00, 15.19it/s]    
Extracting : libgomp-10.2.0-h1234567_51.conda:  75%|███████▌  | 30/40 [00:00<00:00, 15.19it/s]
Extracting : tzdata-2022a-hda174b7_0.conda:  78%|███████▊  | 31/40 [00:00<00:00, 15.19it/s]   
Extracting : requests-2.27.1-pyhd3eb1b0_0.conda:  80%|████████  | 32/40 [00:00<00:00, 15.19it/s]
Extracting : libffi-3.3-h7c1a80f_2.conda:  82%|████████▎ | 33/40 [00:00<00:00, 15.19it/s]       
Extracting : sqlite-3.38.2-h6632b73_0.conda:  85%|████████▌ | 34/40 [00:00<00:00, 15.19it/s]
Extracting : pyopenssl-22.0.0-pyhd3eb1b0_0.conda:  88%|████████▊ | 35/40 [00:00<00:00, 15.19it/s]
Extracting : libstdcxx-ng-10.2.0-h1234567_51.conda:  90%|█████████ | 36/40 [00:00<00:00, 15.19it/s]
Extracting : pycparser-2.21-pyhd3eb1b0_0.conda:  92%|█████████▎| 37/40 [00:00<00:00, 15.19it/s]    
Extracting : pysocks-1.7.1-py39hd43f75c_0.conda:  95%|█████████▌| 38/40 [00:00<00:00, 15.19it/s]
Extracting : setuptools-61.2.0-py39hd43f75c_0.conda:  98%|█████████▊| 39/40 [00:00<00:00, 15.19it/s]
                                                                                                    
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/tmp/Rtmpy7nSam/file2dbad74997b79/1.16.0/0

  added / updated specs:
    - _libgcc_mutex==0.1=main
    - _openmp_mutex==5.1=51_gnu
    - brotlipy==0.7.0=py39hfd63f10_1002
    - ca-certificates==2022.3.29=hd43f75c_1
    - certifi==2021.10.8=py39hd43f75c_2
    - cffi==1.15.0=py39h9a3cfec_1
    - charset-normalizer==2.0.4=pyhd3eb1b0_0
    - colorama==0.4.4=pyhd3eb1b0_0
    - conda-content-trust==0.1.1=pyhd3eb1b0_0
    - conda-package-handling==1.8.1=py39h2f4d8fa_0
    - conda==4.12.0=py39hd43f75c_0
    - cryptography==36.0.0=py39h3d58568_0
    - idna==3.3=pyhd3eb1b0_0
    - ld_impl_linux-aarch64==2.36.1=h0ab8de2_3
    - libffi==3.3=h7c1a80f_2
    - libgcc-ng==10.2.0=h1234567_51
    - libgomp==10.2.0=h1234567_51
    - libstdcxx-ng==10.2.0=h1234567_51
    - ncurses==6.3=h2f4d8fa_2
    - openssl==1.1.1n=h2f4d8fa_0
    - pip==21.2.4=py39hd43f75c_0
    - pycosat==0.6.3=py39hfd63f10_2
    - pycparser==2.21=pyhd3eb1b0_0
    - pyopenssl==22.0.0=pyhd3eb1b0_0
    - pysocks==1.7.1=py39hd43f75c_0
    - python==3.9.12=hc137634_0
    - readline==8.1.2=h2f4d8fa_1
    - requests==2.27.1=pyhd3eb1b0_0
    - ruamel_yaml==0.15.100=py39h2f4d8fa_0
    - setuptools==61.2.0=py39hd43f75c_0
    - six==1.16.0=pyhd3eb1b0_1
    - sqlite==3.38.2=h6632b73_0
    - tk==8.6.11=h241ca14_0
    - tqdm==4.63.0=pyhd3eb1b0_0
    - tzdata==2022a=hda174b7_0
    - urllib3==1.26.8=pyhd3eb1b0_0
    - wheel==0.37.1=pyhd3eb1b0_0
    - xz==5.2.5=hfd63f10_1
    - yaml==0.2.5=hfd63f10_0
    - zlib==1.2.12=h2f4d8fa_1


The following NEW packages will be INSTALLED:

  _libgcc_mutex      pkgs/main/linux-aarch64::_libgcc_mutex-0.1-main
  _openmp_mutex      pkgs/main/linux-aarch64::_openmp_mutex-5.1-51_gnu
  brotlipy           pkgs/main/linux-aarch64::brotlipy-0.7.0-py39hfd63f10_1002
  ca-certificates    pkgs/main/linux-aarch64::ca-certificates-2022.3.29-hd43f75c_1
  certifi            pkgs/main/linux-aarch64::certifi-2021.10.8-py39hd43f75c_2
  cffi               pkgs/main/linux-aarch64::cffi-1.15.0-py39h9a3cfec_1
  charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
  colorama           pkgs/main/noarch::colorama-0.4.4-pyhd3eb1b0_0
  conda              pkgs/main/linux-aarch64::conda-4.12.0-py39hd43f75c_0
  conda-content-tru~ pkgs/main/noarch::conda-content-trust-0.1.1-pyhd3eb1b0_0
  conda-package-han~ pkgs/main/linux-aarch64::conda-package-handling-1.8.1-py39h2f4d8fa_0
  cryptography       pkgs/main/linux-aarch64::cryptography-36.0.0-py39h3d58568_0
  idna               pkgs/main/noarch::idna-3.3-pyhd3eb1b0_0
  ld_impl_linux-aar~ pkgs/main/linux-aarch64::ld_impl_linux-aarch64-2.36.1-h0ab8de2_3
  libffi             pkgs/main/linux-aarch64::libffi-3.3-h7c1a80f_2
  libgcc-ng          pkgs/main/linux-aarch64::libgcc-ng-10.2.0-h1234567_51
  libgomp            pkgs/main/linux-aarch64::libgomp-10.2.0-h1234567_51
  libstdcxx-ng       pkgs/main/linux-aarch64::libstdcxx-ng-10.2.0-h1234567_51
  ncurses            pkgs/main/linux-aarch64::ncurses-6.3-h2f4d8fa_2
  openssl            pkgs/main/linux-aarch64::openssl-1.1.1n-h2f4d8fa_0
  pip                pkgs/main/linux-aarch64::pip-21.2.4-py39hd43f75c_0
  pycosat            pkgs/main/linux-aarch64::pycosat-0.6.3-py39hfd63f10_2
  pycparser          pkgs/main/noarch::pycparser-2.21-pyhd3eb1b0_0
  pyopenssl          pkgs/main/noarch::pyopenssl-22.0.0-pyhd3eb1b0_0
  pysocks            pkgs/main/linux-aarch64::pysocks-1.7.1-py39hd43f75c_0
  python             pkgs/main/linux-aarch64::python-3.9.12-hc137634_0
  readline           pkgs/main/linux-aarch64::readline-8.1.2-h2f4d8fa_1
  requests           pkgs/main/noarch::requests-2.27.1-pyhd3eb1b0_0
  ruamel_yaml        pkgs/main/linux-aarch64::ruamel_yaml-0.15.100-py39h2f4d8fa_0
  setuptools         pkgs/main/linux-aarch64::setuptools-61.2.0-py39hd43f75c_0
  six                pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_1
  sqlite             pkgs/main/linux-aarch64::sqlite-3.38.2-h6632b73_0
  tk                 pkgs/main/linux-aarch64::tk-8.6.11-h241ca14_0
  tqdm               pkgs/main/noarch::tqdm-4.63.0-pyhd3eb1b0_0
  tzdata             pkgs/main/noarch::tzdata-2022a-hda174b7_0
  urllib3            pkgs/main/noarch::urllib3-1.26.8-pyhd3eb1b0_0
  wheel              pkgs/main/noarch::wheel-0.37.1-pyhd3eb1b0_0
  xz                 pkgs/main/linux-aarch64::xz-5.2.5-hfd63f10_1
  yaml               pkgs/main/linux-aarch64::yaml-0.2.5-hfd63f10_0
  zlib               pkgs/main/linux-aarch64::zlib-1.2.12-h2f4d8fa_1


Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/tmp/Rtmpy7nSam/file2dbad74997b79/1.16.0/basilisk.utils/1.16.0/test

  added / updated specs:
    - python=3.9.12


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _openmp_mutex-4.5          |            2_gnu          23 KB  conda-forge
    bzip2-1.0.8                |       h31becfc_5         185 KB  conda-forge
    ca-certificates-2024.2.2   |       hcefe29a_0         152 KB  conda-forge
    ld_impl_linux-aarch64-2.40 |       hba4e955_0         718 KB  conda-forge
    libffi-3.4.2               |       h3557bc0_5          58 KB  conda-forge
    libgcc-ng-13.2.0           |       he277a41_6         448 KB  conda-forge
    libgomp-13.2.0             |       he277a41_6         413 KB  conda-forge
    libnsl-2.0.1               |       h31becfc_0          34 KB  conda-forge
    libsqlite-3.45.3           |       h194ca79_0        1012 KB  conda-forge
    libuuid-2.38.1             |       hb4cce97_0          35 KB  conda-forge
    libzlib-1.2.13             |       h31becfc_5          65 KB  conda-forge
    ncurses-6.4.20240210       |       h0425590_0         905 KB  conda-forge
    openssl-3.3.0              |       h31becfc_0         3.3 MB  conda-forge
    pip-24.0                   |     pyhd8ed1ab_0         1.3 MB  conda-forge
    python-3.9.12              |h5016f1d_1_cpython        12.8 MB  conda-forge
    readline-8.2               |       h8fc344f_1         287 KB  conda-forge
    setuptools-69.5.1          |     pyhd8ed1ab_0         490 KB  conda-forge
    sqlite-3.45.3              |       h3b3482f_0        1020 KB  conda-forge
    tk-8.6.13                  |       h194ca79_0         3.2 MB  conda-forge
    tzdata-2024a               |       h0c530f3_0         117 KB  conda-forge
    wheel-0.43.0               |     pyhd8ed1ab_1          57 KB  conda-forge
    xz-5.2.6                   |       h9cdd2b7_0         430 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        26.9 MB

The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_6
  libgomp            conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_6
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
  libzlib            conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5
  ncurses            conda-forge/linux-aarch64::ncurses-6.4.20240210-h0425590_0
  openssl            conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/linux-aarch64::python-3.9.12-h5016f1d_1_cpython
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/linux-aarch64::sqlite-3.45.3-h3b3482f_0
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /home/biocbuild/tmp/Rtmpy7nSam/file2dbad74997b79/1.16.0/basilisk.utils/1.16.0/test

  added / updated specs:
    - pandas=1.4.3
    - python=3.9.12


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    libblas-3.9.0              |22_linuxaarch64_openblas          14 KB  conda-forge
    libcblas-3.9.0             |22_linuxaarch64_openblas          14 KB  conda-forge
    libgfortran-ng-13.2.0      |       he9431aa_6          24 KB  conda-forge
    libgfortran5-13.2.0        |       h87d9d71_6         1.0 MB  conda-forge
    liblapack-3.9.0            |22_linuxaarch64_openblas          14 KB  conda-forge
    libopenblas-0.3.27         |pthreads_h5a5ec62_0         4.1 MB  conda-forge
    libstdcxx-ng-13.2.0        |       h3f4de04_6         3.6 MB  conda-forge
    numpy-1.26.4               |   py39h91c28bb_0         5.8 MB  conda-forge
    pandas-1.4.3               |   py39h63591b6_0        12.2 MB  conda-forge
    python-dateutil-2.9.0      |     pyhd8ed1ab_0         218 KB  conda-forge
    python_abi-3.9             |           4_cp39           6 KB  conda-forge
    pytz-2024.1                |     pyhd8ed1ab_0         184 KB  conda-forge
    six-1.16.0                 |     pyh6c4a22f_0          14 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        27.2 MB

The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-aarch64::libblas-3.9.0-22_linuxaarch64_openblas
  libcblas           conda-forge/linux-aarch64::libcblas-3.9.0-22_linuxaarch64_openblas
  libgfortran-ng     conda-forge/linux-aarch64::libgfortran-ng-13.2.0-he9431aa_6
  libgfortran5       conda-forge/linux-aarch64::libgfortran5-13.2.0-h87d9d71_6
  liblapack          conda-forge/linux-aarch64::liblapack-3.9.0-22_linuxaarch64_openblas
  libopenblas        conda-forge/linux-aarch64::libopenblas-0.3.27-pthreads_h5a5ec62_0
  libstdcxx-ng       conda-forge/linux-aarch64::libstdcxx-ng-13.2.0-h3f4de04_6
  numpy              conda-forge/linux-aarch64::numpy-1.26.4-py39h91c28bb_0
  pandas             conda-forge/linux-aarch64::pandas-1.4.3-py39h63591b6_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.9.0-pyhd8ed1ab_0
  python_abi         conda-forge/linux-aarch64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0



Downloading and Extracting Packages

libcblas-3.9.0       | 14 KB     |            |   0% 
libcblas-3.9.0       | 14 KB     | ########## | 100% 
libcblas-3.9.0       | 14 KB     | ########## | 100% 

liblapack-3.9.0      | 14 KB     |            |   0% 
liblapack-3.9.0      | 14 KB     | ########## | 100% 
liblapack-3.9.0      | 14 KB     | ########## | 100% 

libgfortran5-13.2.0  | 1.0 MB    |            |   0% 
libgfortran5-13.2.0  | 1.0 MB    | ########## | 100% 
libgfortran5-13.2.0  | 1.0 MB    | ########## | 100% 

python-dateutil-2.9. | 218 KB    |            |   0% 
python-dateutil-2.9. | 218 KB    | ########## | 100% 
python-dateutil-2.9. | 218 KB    | ########## | 100% 

libopenblas-0.3.27   | 4.1 MB    |            |   0% 
libopenblas-0.3.27   | 4.1 MB    | ####7      |  48% 
libopenblas-0.3.27   | 4.1 MB    | #########5 |  95% 
libopenblas-0.3.27   | 4.1 MB    | ########## | 100% 

pytz-2024.1          | 184 KB    |            |   0% 
pytz-2024.1          | 184 KB    | ########## | 100% 
pytz-2024.1          | 184 KB    | ########## | 100% 

numpy-1.26.4         | 5.8 MB    |            |   0% 
numpy-1.26.4         | 5.8 MB    | ##6        |  26% 
numpy-1.26.4         | 5.8 MB    | ###2       |  32% 
numpy-1.26.4         | 5.8 MB    | ####2      |  42% 
numpy-1.26.4         | 5.8 MB    | #####1     |  51% 
numpy-1.26.4         | 5.8 MB    | #####5     |  55% 
numpy-1.26.4         | 5.8 MB    | #####8     |  58% 
numpy-1.26.4         | 5.8 MB    | ######2    |  62% 
numpy-1.26.4         | 5.8 MB    | ######7    |  67% 
numpy-1.26.4         | 5.8 MB    | #######1   |  72% 
numpy-1.26.4         | 5.8 MB    | #######8   |  78% 
numpy-1.26.4         | 5.8 MB    | ########1  |  81% 
numpy-1.26.4         | 5.8 MB    | ########4  |  84% 
numpy-1.26.4         | 5.8 MB    | ########6  |  86% 
numpy-1.26.4         | 5.8 MB    | ########8  |  88% 
numpy-1.26.4         | 5.8 MB    | ########9  |  90% 
numpy-1.26.4         | 5.8 MB    | #########1 |  92% 
numpy-1.26.4         | 5.8 MB    | #########3 |  93% 
numpy-1.26.4         | 5.8 MB    | #########5 |  95% 
numpy-1.26.4         | 5.8 MB    | #########8 |  99% 
numpy-1.26.4         | 5.8 MB    | ########## | 100% 

libgfortran-ng-13.2. | 24 KB     |            |   0% 
libgfortran-ng-13.2. | 24 KB     | ########## | 100% 
libgfortran-ng-13.2. | 24 KB     | ########## | 100% 

libstdcxx-ng-13.2.0  | 3.6 MB    |            |   0% 
libstdcxx-ng-13.2.0  | 3.6 MB    | #7         |  17% 
libstdcxx-ng-13.2.0  | 3.6 MB    | ######4    |  65% 
libstdcxx-ng-13.2.0  | 3.6 MB    | #######5   |  76% 
libstdcxx-ng-13.2.0  | 3.6 MB    | ########2  |  83% 
libstdcxx-ng-13.2.0  | 3.6 MB    | #########2 |  93% 
libstdcxx-ng-13.2.0  | 3.6 MB    | #########8 |  99% 
libstdcxx-ng-13.2.0  | 3.6 MB    | ########## | 100% 

python_abi-3.9       | 6 KB      |            |   0% 
python_abi-3.9       | 6 KB      | ########## | 100% 
python_abi-3.9       | 6 KB      | ########## | 100% 

pandas-1.4.3         | 12.2 MB   |            |   0% 
pandas-1.4.3         | 12.2 MB   |            |   0% 
pandas-1.4.3         | 12.2 MB   | 8          |   8% 
pandas-1.4.3         | 12.2 MB   | #2         |  13% 
pandas-1.4.3         | 12.2 MB   | #7         |  17% 
pandas-1.4.3         | 12.2 MB   | #9         |  20% 
pandas-1.4.3         | 12.2 MB   | ##2        |  22% 
pandas-1.4.3         | 12.2 MB   | ##4        |  24% 
pandas-1.4.3         | 12.2 MB   | ##6        |  26% 
pandas-1.4.3         | 12.2 MB   | ##7        |  28% 
pandas-1.4.3         | 12.2 MB   | ##9        |  29% 
pandas-1.4.3         | 12.2 MB   | ###        |  30% 
pandas-1.4.3         | 12.2 MB   | ###1       |  31% 
pandas-1.4.3         | 12.2 MB   | ###2       |  32% 
pandas-1.4.3         | 12.2 MB   | ###3       |  33% 
pandas-1.4.3         | 12.2 MB   | ###4       |  34% 
pandas-1.4.3         | 12.2 MB   | ###5       |  35% 
pandas-1.4.3         | 12.2 MB   | ###6       |  37% 
pandas-1.4.3         | 12.2 MB   | ###7       |  38% 
pandas-1.4.3         | 12.2 MB   | ###8       |  39% 
pandas-1.4.3         | 12.2 MB   | ###9       |  40% 
pandas-1.4.3         | 12.2 MB   | ####1      |  41% 
pandas-1.4.3         | 12.2 MB   | ####2      |  42% 
pandas-1.4.3         | 12.2 MB   | ####3      |  43% 
pandas-1.4.3         | 12.2 MB   | ####4      |  44% 
pandas-1.4.3         | 12.2 MB   | ####6      |  47% 
pandas-1.4.3         | 12.2 MB   | ####8      |  49% 
pandas-1.4.3         | 12.2 MB   | #####      |  51% 
pandas-1.4.3         | 12.2 MB   | #####4     |  55% 
pandas-1.4.3         | 12.2 MB   | #####7     |  57% 
pandas-1.4.3         | 12.2 MB   | #####8     |  59% 
pandas-1.4.3         | 12.2 MB   | ######     |  60% 
pandas-1.4.3         | 12.2 MB   | ######1    |  62% 
pandas-1.4.3         | 12.2 MB   | ######2    |  63% 
pandas-1.4.3         | 12.2 MB   | ######3    |  63% 
pandas-1.4.3         | 12.2 MB   | #######1   |  71% 
pandas-1.4.3         | 12.2 MB   | ########   |  80% 
pandas-1.4.3         | 12.2 MB   | ########4  |  85% 
pandas-1.4.3         | 12.2 MB   | ########8  |  88% 
pandas-1.4.3         | 12.2 MB   | #########1 |  92% 
pandas-1.4.3         | 12.2 MB   | #########4 |  94% 
pandas-1.4.3         | 12.2 MB   | #########5 |  96% 
pandas-1.4.3         | 12.2 MB   | #########9 | 100% 
pandas-1.4.3         | 12.2 MB   | ########## | 100% 

libblas-3.9.0        | 14 KB     |            |   0% 
libblas-3.9.0        | 14 KB     | ########## | 100% 
libblas-3.9.0        | 14 KB     | ########## | 100% 

six-1.16.0           | 14 KB     |            |   0% 
six-1.16.0           | 14 KB     | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.16.0

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_6
  libgomp            conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_6
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
  libzlib            conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5
  ncurses            conda-forge/linux-aarch64::ncurses-6.4.20240210-h0425590_0
  openssl            conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/linux-aarch64::python-3.9.12-h5016f1d_1_cpython
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/linux-aarch64::sqlite-3.45.3-h3b3482f_0
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.16.0

  added / updated specs:
    - pandas=1.4.3
    - python-dateutil=2.8.2
    - python=3.9.12
    - pytz=2022.2.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-aarch64::libblas-3.9.0-22_linuxaarch64_openblas
  libcblas           conda-forge/linux-aarch64::libcblas-3.9.0-22_linuxaarch64_openblas
  libgfortran-ng     conda-forge/linux-aarch64::libgfortran-ng-13.2.0-he9431aa_6
  libgfortran5       conda-forge/linux-aarch64::libgfortran5-13.2.0-h87d9d71_6
  liblapack          conda-forge/linux-aarch64::liblapack-3.9.0-22_linuxaarch64_openblas
  libopenblas        conda-forge/linux-aarch64::libopenblas-0.3.27-pthreads_h5a5ec62_0
  libstdcxx-ng       conda-forge/linux-aarch64::libstdcxx-ng-13.2.0-h3f4de04_6
  numpy              conda-forge/linux-aarch64::numpy-1.26.4-py39h91c28bb_0
  pandas             conda-forge/linux-aarch64::pandas-1.4.3-py39h63591b6_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
  python_abi         conda-forge/linux-aarch64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_6
  libgomp            conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_6
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
  libzlib            conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5
  ncurses            conda-forge/linux-aarch64::ncurses-6.4.20240210-h0425590_0
  openssl            conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/linux-aarch64::python-3.9.12-h5016f1d_1_cpython
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/linux-aarch64::sqlite-3.45.3-h3b3482f_0
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A

  added / updated specs:
    - pandas=1.4.3
    - python-dateutil=2.8.2
    - python=3.9.12
    - pytz=2022.2.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-aarch64::libblas-3.9.0-22_linuxaarch64_openblas
  libcblas           conda-forge/linux-aarch64::libcblas-3.9.0-22_linuxaarch64_openblas
  libgfortran-ng     conda-forge/linux-aarch64::libgfortran-ng-13.2.0-he9431aa_6
  libgfortran5       conda-forge/linux-aarch64::libgfortran5-13.2.0-h87d9d71_6
  liblapack          conda-forge/linux-aarch64::liblapack-3.9.0-22_linuxaarch64_openblas
  libopenblas        conda-forge/linux-aarch64::libopenblas-0.3.27-pthreads_h5a5ec62_0
  libstdcxx-ng       conda-forge/linux-aarch64::libstdcxx-ng-13.2.0-h3f4de04_6
  numpy              conda-forge/linux-aarch64::numpy-1.26.4-py39h91c28bb_0
  pandas             conda-forge/linux-aarch64::pandas-1.4.3-py39h63591b6_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
  python_abi         conda-forge/linux-aarch64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-hba4e955_0
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-13.2.0-he277a41_6
  libgomp            conda-forge/linux-aarch64::libgomp-13.2.0-he277a41_6
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.45.3-h194ca79_0
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
  libzlib            conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5
  ncurses            conda-forge/linux-aarch64::ncurses-6.4.20240210-h0425590_0
  openssl            conda-forge/linux-aarch64::openssl-3.3.0-h31becfc_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/linux-aarch64::python-3.9.12-h5016f1d_1_cpython
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/linux-aarch64::sqlite-3.45.3-h3b3482f_0
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.4.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B

  added / updated specs:
    - pandas=1.4.2
    - python-dateutil=2.8.1
    - python=3.9.12
    - pytz=2022.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-aarch64::libblas-3.9.0-22_linuxaarch64_openblas
  libcblas           conda-forge/linux-aarch64::libcblas-3.9.0-22_linuxaarch64_openblas
  libgfortran-ng     conda-forge/linux-aarch64::libgfortran-ng-13.2.0-he9431aa_6
  libgfortran5       conda-forge/linux-aarch64::libgfortran5-13.2.0-h87d9d71_6
  liblapack          conda-forge/linux-aarch64::liblapack-3.9.0-22_linuxaarch64_openblas
  libopenblas        conda-forge/linux-aarch64::libopenblas-0.3.27-pthreads_h5a5ec62_0
  libstdcxx-ng       conda-forge/linux-aarch64::libstdcxx-ng-13.2.0-h3f4de04_6
  numpy              conda-forge/linux-aarch64::numpy-1.26.4-py39h91c28bb_0
  pandas             conda-forge/linux-aarch64::pandas-1.4.2-py39h63591b6_2
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  python_abi         conda-forge/linux-aarch64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On Linux aarch64 (1): 'test-install.R:35:5'

[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
> 
> proc.time()
    user   system  elapsed 
 933.121  102.666 1311.402 

Example timings

basilisk.Rcheck/basilisk-Ex.timings

nameusersystemelapsed
BasiliskEnvironment-class0.0030.0000.003
PyPiLink000
basiliskOptions0.0010.0000.000
basiliskStart190.881 14.957210.725
configureBasiliskEnv0.0010.0000.000
createLocalBasiliskEnv 94.155 7.250105.581
listPackages0.5490.0960.957
obtainEnvironmentPath0.0040.0000.004
setupBasiliskEnv0.0040.0000.003
useBasiliskEnv0.8680.1300.914