############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data CancerInSilico ### ############################################################################## ############################################################################## * checking for file ‘CancerInSilico/DESCRIPTION’ ... OK * preparing ‘CancerInSilico’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘CancerInSilico’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RunModel.cpp -o RunModel.o In file included from CellModels/../OffLatticeModel/OffLatticeCellBasedModel.h:8, from CellModels/DrasdoHohmeModel.h:7, from RunModel.cpp:4: CellModels/../OffLatticeModel/OffLatticeCell.h: In member function ‘PointPair OffLatticeCell::centers() const’: CellModels/../OffLatticeModel/OffLatticeCell.h:72:31: note: parameter passing for argument of type ‘std::pair, Point >’ when C++17 is enabled changed to match C++14 in GCC 10.1 72 | PointPair centers() const {return mCenters;} | ^ g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-runner.cpp -o test-runner.o In file included from test-runner.cpp:2: Tests/catch.h:6473:41: error: array bound is not an integer constant before ‘]’ token 6473 | static char altStackMem[SIGSTKSZ]; | ^ Tests/catch.h: In constructor ‘Catch::FatalConditionHandler::FatalConditionHandler()’: Tests/catch.h:6492:30: error: ‘altStackMem’ was not declared in this scope 6492 | sigStack.ss_sp = altStackMem; | ^~~~~~~~~~~ Tests/catch.h: At global scope: Tests/catch.h:6524:53: error: array bound is not an integer constant before ‘]’ token 6524 | char FatalConditionHandler::altStackMem[SIGSTKSZ] = {}; | ^ make: *** [/home/biocbuild/R/R-beta-2024-04-15_r86425/etc/Makeconf:204: test-runner.o] Error 1 ERROR: compilation failed for package ‘CancerInSilico’ * removing ‘/home/biocbuild/tmp/RtmpttvHFz/Rinst3abb3f1e8c58b4/CancerInSilico’ ----------------------------------- ERROR: package installation failed