############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocMetaWorkflow ### ############################################################################## ############################################################################## * checking for file ‘BiocMetaWorkflow/DESCRIPTION’ ... OK * preparing ‘BiocMetaWorkflow’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Authoring_BioC_Workflows.Rmd’ using rmarkdown Quitting from lines 73-76 [createBiocWorkflow] (Authoring_BioC_Workflows.Rmd) Error: processing vignette 'Authoring_BioC_Workflows.Rmd' failed with diagnostics: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/git2r/libs/git2r.so': dlopen(/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/git2r/libs/git2r.so, 0x0006): Library not loaded: '/usr/local/opt/libgit2/lib/libgit2.1.4.dylib' Referenced from: '/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/git2r/libs/git2r.so' Reason: tried: '/usr/local/opt/libgit2/lib/libgit2.1.4.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgit2.1.4.dylib' (no such file), '/usr/local/jdk-18.jdk/Contents/Home/lib/server/libgit2.1.4.dylib' (no such file), '/usr/local/Cellar/libgit2/1.7.1/lib/libgit2.1.4.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgit2.1.4.dylib' (no such file), '/usr/local/jdk-18.jdk/Contents/Home/lib/server/libgit2.1.4.dylib' (no such file) --- failed re-building ‘Authoring_BioC_Workflows.Rmd’ SUMMARY: processing the following file failed: ‘Authoring_BioC_Workflows.Rmd’ Error: Vignette re-building failed. Execution halted