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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:EWCE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings EWCE_1.10.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/EWCE.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EWCE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EWCE’ version ‘1.10.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EWCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                             user system elapsed
controlled_geneset_enrichment              26.618  2.643  30.890
merged_ewce                                25.456  1.272  28.304
filter_genes_without_1to1_homolog          22.262  0.442  23.472
filter_nonorthologs                        21.734  0.488  22.926
generate_bootstrap_plots_for_transcriptome 21.250  0.866  23.325
generate_bootstrap_plots                   17.535  0.672  19.149
bootstrap_enrichment_test                  16.683  0.509  18.341
ewce_expression_data                       15.040  0.669  16.852
check_ewce_genelist_inputs                 13.978  0.470  15.583
sct_normalize                              12.726  0.588  14.021
merge_ctd                                  11.829  0.432  12.665
standardise_ctd                            10.652  0.430  11.764
filter_ctd_genes                           10.474  0.337  11.411
add_res_to_merging_list                     9.884  0.755  12.981
ctd_to_sce                                  8.114  0.188   8.880
fix_bad_mgi_symbols                         7.777  0.470   9.492
bin_columns_into_quantiles                  7.492  0.128   7.991
bin_specificity_into_quantiles              7.232  0.191   8.005
merge_sce                                   6.423  0.229   7.222
generate_celltype_data                      6.254  0.358   7.166
plot_ctd                                    6.421  0.153   7.221
drop_uninformative_genes                    5.905  0.350   6.830
merge_two_expfiles                          4.818  0.352   5.738
get_celltype_table                          4.850  0.261   5.660
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK