############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r qckitfastq -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data qckitfastq ### ############################################################################## ############################################################################## * checking for file 'qckitfastq/DESCRIPTION' ... OK * preparing 'qckitfastq': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'vignette-qckitfastq.Rmd' using rmarkdown !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. ! LaTeX Error: File `tabu.sty' not found. ! Emergency stop. ! pdflatex: major issue: User/administrator updates are out-of-sync. Error: processing vignette 'vignette-qckitfastq.Rmd' failed with diagnostics: LaTeX failed to compile F:/biocbuild/bbs-3.18-bioc/tmpdir/RtmpiWBPYl/Rbuild3dcc4a333224/qckitfastq/vignettes/vignette-qckitfastq.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See vignette-qckitfastq.log for more info. --- failed re-building 'vignette-qckitfastq.Rmd' SUMMARY: processing the following file failed: 'vignette-qckitfastq.Rmd' Error: Vignette re-building failed. Execution halted