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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:canceR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings canceR_1.36.7.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/canceR.Rcheck’
* using R version 4.3.2 Patched (2023-11-01 r85457)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.3 (clang-1403.0.22.14.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘canceR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘canceR’ version ‘1.36.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘canceR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'dialogSamplingGSEA':
dialogSamplingGSEA
  Code: function(n_checked_GenProf, entryWidth = 10, returnValOnCancel
                 = "ID_CANCEL")
  Docs: function(n_hecked_GenProf, entryWidth = 10, returnValOnCancel =
                 "ID_CANCEL")
  Argument names in code not in docs:
    n_checked_GenProf
  Argument names in docs not in code:
    n_hecked_GenProf
  Mismatches in argument names:
    Position: 1 Code: n_checked_GenProf Docs: n_hecked_GenProf

Codoc mismatches from documentation object 'testCheckedCaseGenProf':
testCheckedCaseGenProf
  Code: function(singleGene = 0)
  Docs: function()
  Argument names in code not in docs:
    singleGene

* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'dialogSamplingGSEA'
  ‘n_hecked_GenProf’
Documented arguments not in \usage in documentation object 'dialogSamplingGSEA':
  ‘n_checked_GenProf’

Documented arguments not in \usage in documentation object 'testCheckedCaseGenProf':
  ‘singleGene’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
S3 methods shown with full name in documentation object 'cbind.na':
  ‘cbind.na’

S3 methods shown with full name in documentation object 'rbind.na':
  ‘rbind.na’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs
See
  ‘/Users/biocbuild/bbs-3.18-bioc/meat/canceR.Rcheck/00check.log’
for details.