############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf bgx.buildbin-libdir && mkdir bgx.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=bgx.buildbin-libdir bgx_1.68.3.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'bgx' ... ** using staged installation ** libs Warning: this package has a non-empty 'configure.win' file, so building only the main architecture using C compiler: 'gcc.exe (GCC) 12.3.0' using C++ compiler: 'G__~1.EXE (GCC) 12.3.0' g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bgx.cc -o bgx.o In file included from bgx.cc:32: rand.hh: In member function 'RealType Rand::Normal()': rand.hh:399:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 399 | if(u0<.5) return y; return -y; | ^~ rand.hh:399:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 399 | if(u0<.5) return y; return -y; | ^~~~~~ rand.hh:406:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 406 | if(u0<.5) return y; return -y; | ^~ rand.hh:406:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 406 | if(u0<.5) return y; return -y; | ^~~~~~ rand.hh:413:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 413 | if(u0<.5) return y; return -y; | ^~ rand.hh:413:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 413 | if(u0<.5) return y; return -y; | ^~~~~~ rand.hh:420:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 420 | if(u0<.5) return y; return -y; | ^~ rand.hh:420:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | if(u0<.5) return y; return -y; | ^~~~~~ g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bgx_frontend.cc -o bgx_frontend.o gcc -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -std=c99 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c qnorm.c -o qnorm.o g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rundir.cc -o rundir.o g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sokal.cc -o sokal.o g++ -std=gnu++17 -shared -s -static-libgcc -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.18-bioc/meat/bgx.buildbin-libdir/00LOCK-bgx/00new/bgx/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'bgx' as bgx_1.68.3.zip * DONE (bgx)