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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data autonomics
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* checking for file ‘autonomics/DESCRIPTION’ ... OK
* preparing ‘autonomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘using_autonomics.Rmd’ using rmarkdown
2024-04-15 16:59:21.011 R[64384:2526485313] XType: com.apple.fonts is not accessible.
2024-04-15 16:59:21.012 R[64384:2526485313] XType: XTFontStaticRegistry is enabled.
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161731/suppl//GSE161731_counts.csv.gz?tool=geoquery'
Content type 'application/x-gzip' length 8347405 bytes (8.0 MB)
==================================================
downloaded 8.0 MB

trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161731/suppl//GSE161731_counts_key.csv.gz?tool=geoquery'
Content type 'application/x-gzip' length 2443 bytes
==================================================
downloaded 2443 bytes

trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161731/suppl//GSE161731_key.csv.gz?tool=geoquery'
Content type 'application/x-gzip' length 2398 bytes
==================================================
downloaded 2398 bytes

trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161731/suppl//GSE161731_xpr_nlcpm.csv.gz?tool=geoquery'
Content type 'application/x-gzip' length 16839511 bytes (16.1 MB)
==================================================
downloaded 16.1 MB

trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161731/suppl//GSE161731_xpr_tpm_geo.txt.gz?tool=geoquery'
Content type 'application/x-gzip' length 23859414 bytes (22.8 MB)
==================================================
downloaded 22.8 MB


Quitting from lines  at lines 199-202 [unnamed-chunk-11] (using_autonomics.Rmd)
Error: processing vignette 'using_autonomics.Rmd' failed with diagnostics:
NA/NaN argument
--- failed re-building ‘using_autonomics.Rmd’

SUMMARY: processing the following file failed:
  ‘using_autonomics.Rmd’

Error: Vignette re-building failed.
Execution halted