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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:Voyager.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --timings Voyager_1.3.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/Voyager.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘Voyager/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Voyager’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Voyager’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
calculateMultivariate 209.740  0.418 213.591
calculateBivariate     28.204  0.264  31.462
clusterVariograms      12.984  0.112  15.521
plotGeometry            9.124  0.291  15.307
ElbowPlot               8.557  0.248  13.806
plotVariogram           7.985  0.159  10.626
plotCrossVariogram      7.617  0.412  13.684
moranPlot               7.232  0.152   9.842
plotCellBin2D           6.229  0.104   9.343
plotCrossVariogramMap   5.883  0.235   9.209
plotCorrelogram         5.457  0.403   8.284
plotColDataHistogram    5.486  0.115   8.498
plotColDataFreqpoly     5.301  0.048   8.344
plotLocalResult         5.063  0.156   8.669
plotSpatialFeature      4.771  0.112   7.322
plotVariogramMap        4.738  0.080   7.889
calculateUnivariate     4.654  0.108   9.187
plotColGraph            4.529  0.100   7.543
clusterCorrelograms     3.983  0.183   9.675
clusterMoranPlot        3.819  0.156   7.550
spatialReducedDim       3.809  0.096   8.548
getParams               3.781  0.060   8.089
moranBounds             3.523  0.064   6.005
plotDimLoadings         3.194  0.140   6.210
multispati_rsp          2.898  0.064   8.492
plotMoranMC             2.772  0.076   5.933
colFeatureData          2.508  0.072   8.797
listw2sparse            2.171  0.055   5.281
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  • plot/not-facetting-multispati-elbow-negative-only.svg
  • plot/one-variable-color-by.svg
  • plot/one-variable-facetting.svg
  • plot/one-variable-fill-by.svg
  • plot/plotcorrelogram-categorical-color-by.svg
  • plot/plotcorrelogram-coldata-i.svg
  • plot/plotcorrelogram-continuous-color-by.svg
  • plot/plotcorrelogram-one-gene-c.svg
  • plot/plotcorrelogram-one-gene-corr.svg
  • plot/plotcorrelogram-specify-gene-and-coldata-i.svg
  • plot/plotdimloadings-not-balanced.svg
  • plot/with-subset-freqpoly.svg
  • plot/with-subset.svg
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘overview.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/Voyager.Rcheck/00check.log’
for details.