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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:TimiRGeN.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --timings TimiRGeN_1.11.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/TimiRGeN.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘TimiRGeN/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TimiRGeN’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TimiRGeN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 3 marked UTF-8 strings
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
addIds         4.846  0.202  12.930
wikiMrna       4.604  0.243  11.132
quickReg       4.620  0.174   9.238
clusterList    4.545  0.215   7.782
quickHClust    4.464  0.256   8.938
quickTCPred    4.232  0.211   7.697
multiReg       4.196  0.225   8.521
quickDMap      4.028  0.328   7.292
quickPathwayTC 4.040  0.216   7.197
linearRegr     4.102  0.120   8.377
quickTC        4.026  0.192   8.397
quickDendro    3.987  0.220   6.653
quickCrossCorr 3.809  0.287   8.208
makeDynamic    3.767  0.182   6.241
eNames         3.470  0.131   7.173
diffExpressRes 3.193  0.149   7.597
makeMapp       3.216  0.115   7.776
dloadGmt       2.811  0.139  10.248
quickBar       2.283  0.177   6.127
enrichWiki     2.299  0.088   7.429
getIdsMrna     2.222  0.065   5.836
gmtEnsembl     1.512  0.049   5.930
returnCluster  1.188  0.028   5.322
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘TimiRGeN_tutorial.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/TimiRGeN.Rcheck/00check.log’
for details.