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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:SpatialFeatureExperiment.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --timings SpatialFeatureExperiment_1.3.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/SpatialFeatureExperiment.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘SpatialFeatureExperiment/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SpatialFeatureExperiment’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SpatialFeatureExperiment’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  ‘S4Vectors:::disableValidity’ ‘spdep:::minmax.listw’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                                      user system elapsed
removeEmptySpace                                     8.861  0.563  12.576
SpatialFeatureExperiment-coercion                    6.698  0.447   7.162
dimGeometries                                        6.723  0.396  12.525
cbind-SpatialFeatureExperiment-method                5.458  1.350  12.453
spatialGraphs                                        6.396  0.249  11.510
SFE-image                                            5.269  0.343   9.943
findSpatialNeighbors-SpatialFeatureExperiment-method 5.115  0.247  10.951
findVisiumGraph                                      5.131  0.171  10.093
crop                                                 4.956  0.335   8.798
SFE-transform                                        3.862  0.364   6.686
changeSampleIDs                                      3.246  0.583   6.532
annotPred                                            2.883  0.407   5.675
show-SpatialFeatureExperiment-method                 3.094  0.139   5.645
annotOp                                              2.600  0.370   5.405
SpatialFeatureExperiment-subset                      2.645  0.268   5.785
updateObject                                         2.419  0.099   5.043
annotGeometries                                      2.212  0.232   5.627
sampleIDs                                            2.269  0.115   5.303
unit-SpatialFeatureExperiment-method                 2.265  0.059   5.871
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘SFE.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/SpatialFeatureExperiment.Rcheck/00check.log’
for details.