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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:RCAS.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings RCAS_1.28.2.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/RCAS.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCAS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCAS’ version ‘1.28.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RCAS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                  user system elapsed
runMotifDiscovery               48.146  0.883  34.958
getMotifSummaryTable            20.961  0.522  58.728
getFeatureBoundaryCoverageMulti 19.785  0.803  20.630
calculateCoverageProfileList    15.945  0.352  16.325
calculateCoverageProfile        13.901  0.311  14.240
summarizeQueryRegionsMulti      11.347  0.327  32.953
findDifferentialMotifs          11.199  0.310   8.369
summarizeQueryRegions           10.823  0.671  11.520
getTxdbFeaturesFromGRanges      10.733  0.395  11.149
getTargetedGenesTable           10.202  0.571  10.787
getFeatureBoundaryCoverageBin    5.952  0.311   6.275
plotFeatureBoundaryCoverage      5.978  0.120   6.109
getFeatureBoundaryCoverage       5.538  0.411   5.962
createDB                         4.221  0.097  23.593
findEnrichedFunctions            0.758  0.044   5.514
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK