############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HPAStainR ### ############################################################################## ############################################################################## * checking for file ‘HPAStainR/DESCRIPTION’ ... OK * preparing ‘HPAStainR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘HPAStainR.Rmd’ using rmarkdown trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip' Content type 'application/zip' length 5615221 bytes (5.4 MB) ================================================== downloaded 5.4 MB trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip' Content type 'application/zip' length 3612666 bytes (3.4 MB) ================================================== downloaded 3.4 MB Quitting from lines 89-90 [normal_data_hpar] (HPAStainR.Rmd) Error: processing vignette 'HPAStainR.Rmd' failed with diagnostics: object 'hpaNormalTissue' not found --- failed re-building ‘HPAStainR.Rmd’ SUMMARY: processing the following file failed: ‘HPAStainR.Rmd’ Error: Vignette re-building failed. Execution halted