############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data GUIDEseq ### ############################################################################## ############################################################################## * checking for file ‘GUIDEseq/DESCRIPTION’ ... OK * preparing ‘GUIDEseq’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GUIDEseq.Rnw’ using Sweave Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Attaching package: ‘S4Vectors’ The following object is masked from ‘package:utils’: findMatches The following objects are masked from ‘package:base’: I, expand.grid, unname Loading required package: IRanges Loading required package: GenomeInfoDb computing coverage for plus strand ... computing coverage for minus strand ... call peaks ... finding local max for chromosome: chr13 Loading required package: BSgenome Loading required package: Biostrings Loading required package: XVector Attaching package: ‘Biostrings’ The following object is masked from ‘package:base’: strsplit Loading required package: BiocIO Loading required package: rtracklayer Attaching package: ‘rtracklayer’ The following object is masked from ‘package:BiocIO’: FileForFormat Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Remove duplicate reads ... Peak calling ... computing coverage for plus strand ... computing coverage for minus strand ... call peaks ... finding local max for chromosome: chr13 combine plus and minus peaks ... keep peaks not in merged.gr but present in both peaks1 and peaks2 offtarget analysis ... Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Warning in searchHits(gRNAs = gRNAs1, PAM = PAM, PAM.pattern = PAM.pattern, : No matching found, please check your input sequence, and make sure you are using the right genome. You can also alter your search criteria such as increasing max.mismatch! Add sequence depth information. Get the number of unique UMIs for each offtarget. Please check output file in directory bowtie2.HEK293_site4_chr13.sort_HEK239_site4min1window20step20distance40 Error: processing vignette 'GUIDEseq.Rnw' failed with diagnostics: Running 'texi2dvi' on 'GUIDEseq.tex' failed. LaTeX errors: ! Missing \endcsname inserted. \IeC l.631 \bibitem{Rodríguez et al., 2021} Rodríguez TC, Dadafarin S, Pratt HE,... ! Emergency stop. \IeC l.631 \bibitem{Rodríguez et al., 2021} Rodríguez TC, Dadafarin S, Pratt HE,... ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘GUIDEseq.Rnw’ SUMMARY: processing the following file failed: ‘GUIDEseq.Rnw’ Error: Vignette re-building failed. Execution halted