############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL FunChIP ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library' * installing *source* package 'FunChIP' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.3.0' using C++11 g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I../inst/include -I. -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmean_function.cpp -o kmean_function.o kmean_function.cpp: In function 'SEXPREC* kmean_function(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': kmean_function.cpp:74:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 74 | for (unsigned int i =0 ; i&, const int&, std::vector&, const double&, const double&, const int&, const char&, const double&, const double&, std::vector&, std::vector&, std::vector&, const double&, const double&, int, char, char)': kmean_function.cpp:638:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 638 | while( iter < iter_max and number_distances_low < dati.size() and cluster_vuoti==0){ //and number_clusters_different > 0 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ kmean_function.cpp:677:52: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] 677 | if ( (unsigned int)number_clusters_different == dati.size() & iter != 1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ kmean_function.cpp:681:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 681 | if (number_distances_low== dati.size()) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ kmean_function.cpp: In function 'void normalize_data(std::vector&, std::vector&, const int&)': kmean_function.cpp:759:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 759 | for (unsigned int i=0; i peak::area(int, char) const': peak.h:154:46: warning: 'D' may be used uninitialized [-Wmaybe-uninitialized] 154 | area_def[0] = sqrt(area[0]/2)/D; | ~~~~~~~~~~~~~~~^~ peak.h:130:17: note: 'D' was declared here 130 | int D; | ^ g++ -shared -s -static-libgcc -o FunChIP.dll tmp.def kmean_function.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.18-bioc/R/library/00LOCK-FunChIP/00new/FunChIP/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FunChIP)