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### Running command:
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###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EWCE.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings EWCE_1.10.2.tar.gz
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* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/EWCE.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'EWCE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EWCE' version '1.10.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EWCE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                            user system elapsed
controlled_geneset_enrichment              27.70   1.59   29.42
merged_ewce                                22.00   0.91   23.33
generate_bootstrap_plots_for_transcriptome 17.94   0.86   19.02
filter_genes_without_1to1_homolog          15.63   0.49   16.13
filter_nonorthologs                        14.78   0.58   15.36
generate_bootstrap_plots                   14.47   0.77   15.36
bootstrap_enrichment_test                  13.53   0.75   14.57
check_ewce_genelist_inputs                 12.34   0.70   13.39
ewce_expression_data                       11.86   0.71   12.73
sct_normalize                              11.36   0.43   11.89
add_res_to_merging_list                     8.35   1.92   11.61
standardise_ctd                             8.77   0.58    9.38
filter_ctd_genes                            8.56   0.37    8.97
merge_ctd                                   7.51   0.54    8.08
bin_columns_into_quantiles                  5.90   0.33    6.27
fix_bad_mgi_symbols                         5.71   0.43    6.42
ctd_to_sce                                  5.05   0.41    5.49
bin_specificity_into_quantiles              5.08   0.36    5.46
generate_celltype_data                      5.23   0.15    5.44
merge_sce                                   4.82   0.39    5.23
drop_uninformative_genes                    4.53   0.31    5.28
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK