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### Running command:
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###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:EWCE.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings EWCE_1.10.2.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/EWCE.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘EWCE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EWCE’ version ‘1.10.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EWCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                             user system elapsed
merged_ewce                                20.444  1.327  21.560
controlled_geneset_enrichment              20.455  1.135  21.686
sct_normalize                              15.479  1.377  18.228
generate_bootstrap_plots_for_transcriptome 15.826  0.852  16.675
filter_nonorthologs                        14.527  0.518  15.053
filter_genes_without_1to1_homolog          14.044  0.428  14.473
generate_bootstrap_plots                   12.861  0.839  13.638
bootstrap_enrichment_test                  11.174  0.752  11.877
ewce_expression_data                       10.846  0.798  11.617
merge_ctd                                  10.201  0.996  13.656
check_ewce_genelist_inputs                  9.788  0.683  10.443
standardise_ctd                             9.997  0.308  11.576
merge_sce                                   9.373  0.419  11.581
filter_ctd_genes                            7.428  0.240   7.607
merge_two_expfiles                          6.311  0.728   8.320
fix_bad_mgi_symbols                         5.964  0.776   6.976
add_res_to_merging_list                     5.936  0.476   6.883
generate_celltype_data                      4.749  0.756   5.627
drop_uninformative_genes                    4.433  0.835   5.367
plot_ctd                                    4.733  0.184   5.120
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘EWCE.Rmd’ using ‘UTF-8’... OK
  ‘extended.Rmd’ using ‘UTF-8’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK