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### Running command:
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###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:EBImage.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings EBImage_4.44.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/EBImage.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘EBImage/DESCRIPTION’ ... OK
* this is package ‘EBImage’ version ‘4.44.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EBImage’ can be installed ... OK
* used C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test.R’
  Comparing ‘test.Rout’ to ‘test.Rout.save’ ...231c231,234
< checking IO for 'logo' ... FAIL
---
> checking IO for 'logo' ... PASS
> Warning message:
> In readTIFF(x, all = all, ...) :
>   TIFFReadDirectory: Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.
254c257
< checking 'display' ............................ PASS (68b260509c7ab340) 189.7
---
> checking 'display' ............................ PASS (4c9befc7a9f9f22e) 165.3
329c332
< checking 'display' ............................ PASS (2b8c45decab7535f) 174.7
---
> checking 'display' ............................ PASS (174250a6d96dee60) 150.3
390c393
< checking 'hist' ............................... PASS (54e35f2c85f2121f) 20513.55
---
> checking 'hist' ............................... PASS (e7a708b4f96f88dc) 20513.55
406c409
< checking 'display' ............................ PASS (2f08603669942058) 421.7
---
> checking 'display' ............................ PASS (dada341199e50c3d) 397.3
483c486
< checking 'display' ............................ PASS (fb5a878c739fdf0a) 357.7
---
> checking 'display' ............................ PASS (bb2b4586191eb980) 333.3
506c509
< checking 'computeFeatures' .................... PASS (0e0499b50d90be9d) 3988836
---
> checking 'computeFeatures' .................... PASS (c1ff2e62e7bb8eee) 3989786
560c563
< checking 'display' ............................ PASS (38b074e79a93b661) 330.7
---
> checking 'display' ............................ PASS (3d646d4f07d194ba) 306.3
583c586
< checking 'computeFeatures' .................... PASS (10c741c6898b4b96) 746878.2
---
> checking 'computeFeatures' .................... PASS (a33c53edd3cf8a46) 746878.2
639c642
< checking 'display' ............................ PASS (0f4b8075d5f24755) 309.7
---
> checking 'display' ............................ PASS (2fb2fcab54a4ea5a) 285.3
662c665
< checking 'computeFeatures' .................... PASS (6f8fccf9be44bfef) 416109350
---
> checking 'computeFeatures' .................... PASS (1bf064e6a11f2410) 416164140
668,669c671,672
< checking 'gblur' .............................. PASS (bd9e6638aeecda72) 1037581
< checking 'filter2' ............................ PASS (448257eb6e58efb1) 26149148
---
> checking 'gblur' .............................. PASS (9224b720f9d00006) 1037581
> checking 'filter2' ............................ PASS (637287a5df76a79d) 26149148
717c720
< checking 'display' ............................ PASS (ef6dce96392bbb6d) 263.7
---
> checking 'display' ............................ PASS (bc877f5317c575b2) 239.3
740c743
< checking 'computeFeatures' .................... PASS (157a5f036e189a0a) 749353.1
---
> checking 'computeFeatures' .................... PASS (151a0d98d309d0b1) 749353.1
795c798
< checking 'display' ............................ PASS (4ca607589cc2787e) 280.7
---
> checking 'display' ............................ PASS (d28e3e75eed04056) 256.3
818c821
< checking 'computeFeatures' .................... PASS (cddeb53183f0a518) 734993.9
---
> checking 'computeFeatures' .................... PASS (53798e843cdbfa9f) 734993.9
873c876
< checking 'display' ............................ PASS (4ca607589cc2787e) 280.7
---
> checking 'display' ............................ PASS (d28e3e75eed04056) 256.3
896c899
< checking 'computeFeatures' .................... PASS (cddeb53183f0a518) 734993.9
---
> checking 'computeFeatures' .................... PASS (53798e843cdbfa9f) 734993.9
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘EBImage-introduction.Rmd’ using ‘UTF-8’... failed
 ERROR
Errors in running code in vignettes:
when running code in ‘EBImage-introduction.Rmd’
  ...
> opts_chunk$set(comment = NA, fig.align = "center", 
+     dpi = .dpi)

> knit_hooks$set(crop = NULL)

> .output = output()

  When sourcing ‘EBImage-introduction.R’:
Error: could not find function "output"
Execution halted

* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/EBImage.Rcheck/00check.log’
for details.