############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:EBImage.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings EBImage_4.44.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/EBImage.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (GCC) 10.3.1 GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘EBImage/DESCRIPTION’ ... OK * this is package ‘EBImage’ version ‘4.44.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘EBImage’ can be installed ... OK * used C compiler: ‘gcc (GCC) 10.3.1’ * used C++ compiler: ‘g++ (GCC) 10.3.1’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘test.R’ Comparing ‘test.Rout’ to ‘test.Rout.save’ ...231c231,234 < checking IO for 'logo' ... FAIL --- > checking IO for 'logo' ... PASS > Warning message: > In readTIFF(x, all = all, ...) : > TIFFReadDirectory: Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples. 238c241 < checking 'hist' ............................... PASS (d722533c4f3f4627) Inf --- > checking 'hist' ............................... PASS (8ef6dc298b72d591) Inf 254c257 < checking 'display' ............................ PASS (68b260509c7ab340) 189.7 --- > checking 'display' ............................ PASS (4c9befc7a9f9f22e) 165.3 313c316 < checking 'hist' ............................... PASS (30119fb81dbf2fbb) Inf --- > checking 'hist' ............................... PASS (c32dc2571db86a0f) Inf 329c332 < checking 'display' ............................ PASS (2b8c45decab7535f) 174.7 --- > checking 'display' ............................ PASS (174250a6d96dee60) 150.3 335c338 < checking 'rotate' ............................. PASS (e342aad091c41434) 483.6843 --- > checking 'rotate' ............................. PASS (3db98677c68c5102) 483.6843 390c393 < checking 'hist' ............................... PASS (54e35f2c85f2121f) 20513.55 --- > checking 'hist' ............................... PASS (e7a708b4f96f88dc) 20513.55 406c409 < checking 'display' ............................ PASS (2f08603669942058) 421.7 --- > checking 'display' ............................ PASS (dada341199e50c3d) 397.3 411,412c414,415 < checking 'resize' ............................. PASS (53079603052afb20) 1419476 < checking 'rotate' ............................. PASS (3a57ba32a333f879) 2493977 --- > checking 'resize' ............................. PASS (7882055c8b670bf4) 1419476 > checking 'rotate' ............................. PASS (559860bb5c99cb82) 2493977 416c419 < checking 'affine' ............................. PASS (b62bb7696f29b3d3) 54171.17 --- > checking 'affine' ............................. PASS (11616142290451c1) 54171.17 483c486 < checking 'display' ............................ PASS (37188dba59e41a94) 357.7 --- > checking 'display' ............................ PASS (bb2b4586191eb980) 333.3 488,489c491,492 < checking 'resize' ............................. PASS (959a9d09fe7ac665) 2941770 < checking 'rotate' ............................. PASS (15e6fc0e7664a911) 1247487 --- > checking 'resize' ............................. PASS (bb1209a84d6b3709) 2941770 > checking 'rotate' ............................. PASS (924fc66d1ec91d44) 1247487 493c496 < checking 'affine' ............................. PASS (b310c82ce2d000ba) 22238.15 --- > checking 'affine' ............................. PASS (7a760844869cec92) 22238.15 506c509 < checking 'computeFeatures' .................... PASS (9d1467408a871a43) 3989340 --- > checking 'computeFeatures' .................... PASS (c1ff2e62e7bb8eee) 3989786 560c563 < checking 'display' ............................ PASS (c5174d52d6cd03c1) 330.7 --- > checking 'display' ............................ PASS (3d646d4f07d194ba) 306.3 565,566c568,569 < checking 'resize' ............................. PASS (ff7a963b07cc340b) 15155777 < checking 'rotate' ............................. PASS (7a904b4d37503022) 4525312 --- > checking 'resize' ............................. PASS (fe9aa55b037def9d) 15155777 > checking 'rotate' ............................. PASS (2a6f5001ae7d116d) 4525312 570c573 < checking 'affine' ............................. PASS (838cd8c4ef1dc919) 226067.6 --- > checking 'affine' ............................. PASS (517c3559acf97cf4) 226067.6 583c586 < checking 'computeFeatures' .................... PASS (bfbdb8ae77d7208f) 746878.2 --- > checking 'computeFeatures' .................... PASS (a33c53edd3cf8a46) 746878.2 639c642 < checking 'display' ............................ PASS (a1ab48763fafa683) 309.7 --- > checking 'display' ............................ PASS (2fb2fcab54a4ea5a) 285.3 644,645c647,648 < checking 'resize' ............................. PASS (2e271b3bc9e7a27c) 9108608 < checking 'rotate' ............................. PASS (d16b29b87668867f) 1600126 --- > checking 'resize' ............................. PASS (211e86386b1010af) 9108608 > checking 'rotate' ............................. PASS (d67e39e3cb07d275) 1600126 649c652 < checking 'affine' ............................. PASS (8dc830edbafa5c9b) 133467.8 --- > checking 'affine' ............................. PASS (a6e552f84324fe21) 133467.8 662c665 < checking 'computeFeatures' .................... PASS (43ecf9f9b86750df) 416135621 --- > checking 'computeFeatures' .................... PASS (1bf064e6a11f2410) 416164140 668,669c671,672 < checking 'gblur' .............................. PASS (c89b57b16a0a5a0e) 1037581 < checking 'filter2' ............................ PASS (61b808f8e461456f) 26149148 --- > checking 'gblur' .............................. PASS (9224b720f9d00006) 1037581 > checking 'filter2' ............................ PASS (637287a5df76a79d) 26149148 717c720 < checking 'display' ............................ PASS (ef6dce96392bbb6d) 263.7 --- > checking 'display' ............................ PASS (bc877f5317c575b2) 239.3 722,723c725,726 < checking 'resize' ............................. PASS (3127cba298aad55f) 76725662 < checking 'rotate' ............................. PASS (bca3ab9c26f81918) 4140744 --- > checking 'resize' ............................. PASS (dd96ecc9ed75e744) 76725662 > checking 'rotate' ............................. PASS (19319de30582c1d6) 4140744 727c730 < checking 'affine' ............................. PASS (a3eeaaeedbf1f7a2) 301692.6 --- > checking 'affine' ............................. PASS (592877c7d17e1d22) 301692.6 740c743 < checking 'computeFeatures' .................... PASS (1303d9319886c4aa) 749353.1 --- > checking 'computeFeatures' .................... PASS (151a0d98d309d0b1) 749353.1 795c798 < checking 'display' ............................ PASS (4ca607589cc2787e) 280.7 --- > checking 'display' ............................ PASS (d28e3e75eed04056) 256.3 800,801c803,804 < checking 'resize' ............................. PASS (00aef78b69242c90) 72772706 < checking 'rotate' ............................. PASS (f42404ca4cc1e57e) 3978266 --- > checking 'resize' ............................. PASS (5ab5e219e21b7d77) 72772706 > checking 'rotate' ............................. PASS (5ea8cc41d39fe2c4) 3978266 805c808 < checking 'affine' ............................. PASS (9c7b3a7ea964b836) 219714.6 --- > checking 'affine' ............................. PASS (76f6b18d2cb7c9c2) 219714.6 818c821 < checking 'computeFeatures' .................... PASS (ad0abaaae7d35d0f) 734993.9 --- > checking 'computeFeatures' .................... PASS (53798e843cdbfa9f) 734993.9 873c876 < checking 'display' ............................ PASS (4ca607589cc2787e) 280.7 --- > checking 'display' ............................ PASS (d28e3e75eed04056) 256.3 878,879c881,882 < checking 'resize' ............................. PASS (e94d70507c46424a) 72772706 < checking 'rotate' ............................. PASS (bb28d7a739148c1e) 3978266 --- > checking 'resize' ............................. PASS (22d4ff5205c02f14) 72772706 > checking 'rotate' ............................. PASS (3e6dee126668bb5a) 3978266 883c886 < checking 'affine' ............................. PASS (00a69976accd24e7) 219714.6 --- > checking 'affine' ............................. PASS (559df6f741145f7f) 219714.6 896c899 < checking 'computeFeatures' .................... PASS (ad0abaaae7d35d0f) 734993.9 --- > checking 'computeFeatures' .................... PASS (53798e843cdbfa9f) 734993.9 OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.18-bioc/meat/EBImage.Rcheck/00check.log’ for details.