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This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 243/421HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.38.0  (landing page)
Y-h. Taguchi
Snapshot Date: 2023-10-12 07:30:02 -0400 (Thu, 12 Oct 2023)
git_url: https://git.bioconductor.org/packages/miRNATarget
git_branch: RELEASE_3_17
git_last_commit: 149b5b1
git_last_commit_date: 2023-04-25 09:54:23 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

CHECK results for miRNATarget on nebbiolo1


To the developers/maintainers of the miRNATarget package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: miRNATarget
Version: 1.38.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings miRNATarget_1.38.0.tar.gz
StartedAt: 2023-10-12 11:42:56 -0400 (Thu, 12 Oct 2023)
EndedAt: 2023-10-12 11:44:18 -0400 (Thu, 12 Oct 2023)
EllapsedTime: 82.9 seconds
RetCode: 0
Status:   OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings miRNATarget_1.38.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/miRNATarget.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 54.7Mb
  sub-directories of 1Mb or more:
    data  54.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘miRNATarget.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.17-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.



Installation output

miRNATarget.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0570.0000.056
HS_refseq_to_affy_hc_g1100.0040.0000.005
HS_refseq_to_affy_hg_focus0.0160.0000.017
HS_refseq_to_affy_hg_u133_plus_20.0550.0030.060
HS_refseq_to_affy_hg_u133a0.0360.0000.037
HS_refseq_to_affy_hg_u133a_20.0350.0000.035
HS_refseq_to_affy_hg_u133b0.0170.0000.017
HS_refseq_to_affy_hg_u95a0.0230.0000.023
HS_refseq_to_affy_hg_u95av20.0130.0070.021
HS_refseq_to_affy_hg_u95b0.0130.0000.014
HS_refseq_to_affy_hg_u95c0.010.000.01
HS_refseq_to_affy_hg_u95d0.0050.0000.006
HS_refseq_to_affy_hg_u95e0.010.000.01
HS_refseq_to_affy_huex_1_0_st_v20.8950.0350.930
HS_refseq_to_affy_hugene_1_0_st_v10.0470.0040.050
HS_refseq_to_affy_hugenefl0.0100.0040.014
HS_refseq_to_affy_u133_x3p0.0700.0030.074
HS_refseq_to_agilent_cgh_44b0.0130.0010.013
HS_refseq_to_agilent_wholegenome0.0740.0000.073
HS_refseq_to_canonical_transcript_stable_id0.0700.0000.071
HS_refseq_to_ccds0.0390.0000.040
HS_refseq_to_codelink0.0410.0000.041
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0020.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0020.0000.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0000.0010.001
HS_refseq_to_embl0.7190.0340.753
HS_refseq_to_ensembl_exon_id0.0030.0000.004
HS_refseq_to_ensembl_gene_id0.0470.0000.047
HS_refseq_to_ensembl_peptide_id0.0390.0040.042
HS_refseq_to_ensembl_transcript_id0.0550.0000.055
HS_refseq_to_entrezgene0.0440.0040.047
HS_refseq_to_hgnc_id0.1640.0080.171
HS_refseq_to_hgnc_symbol0.0430.0010.042
HS_refseq_to_hgnc_transcript_name0.0480.0000.047
HS_refseq_to_illumina_humanht_120.050.000.05
HS_refseq_to_illumina_humanwg_6_v10.0350.0070.043
HS_refseq_to_illumina_humanwg_6_v20.0360.0000.036
HS_refseq_to_illumina_humanwg_6_v30.0430.0000.043
HS_refseq_to_interpro0.1140.0000.115
HS_refseq_to_ipi0.1090.0000.108
HS_refseq_to_merops0.0000.0050.004
HS_refseq_to_pdb0.0830.0030.086
HS_refseq_to_pfam0.0630.0040.067
HS_refseq_to_phalanx_onearray0.0400.0000.039
HS_refseq_to_protein_id1.0900.0041.094
HS_refseq_to_refseq_dna0.0540.0000.054
HS_refseq_to_refseq_genomic0.0010.0000.001
HS_refseq_to_refseq_peptide0.0870.0000.087
HS_refseq_to_rfam0.0020.0000.003
HS_refseq_to_rfam_gene_name0.0000.0010.001
HS_refseq_to_rfam_transcript_name0.0000.0010.000
HS_refseq_to_smart0.0320.0010.033
HS_refseq_to_tigrfam0.0050.0000.005
HS_refseq_to_ucsc0.0450.0000.045
HS_refseq_to_unigene0.0580.0000.059
HS_refseq_to_uniprot_genename0.040.000.04
HS_refseq_to_uniprot_genename_transcript_name0.0010.0000.001
HS_refseq_to_uniprot_sptrembl0.0010.0000.001
HS_refseq_to_uniprot_swissprot0.0010.0010.002
HS_refseq_to_uniprot_swissprot_accession0.0000.0010.001
HS_refseq_to_wikigene_id0.0000.0000.001
HS_refseq_to_wikigene_name0.0440.0000.044
MM_conv_id0.0020.0000.002
MM_refseq_to_affy_mg_u74a0.0150.0000.015
MM_refseq_to_affy_mg_u74av20.0090.0030.013
MM_refseq_to_affy_mg_u74b0.0110.0000.012
MM_refseq_to_affy_mg_u74bv20.0110.0000.012
MM_refseq_to_affy_mg_u74c0.0050.0000.004
MM_refseq_to_affy_mg_u74cv20.0060.0000.005
MM_refseq_to_affy_moe430a0.0300.0000.029
MM_refseq_to_affy_moe430b0.0140.0000.014
MM_refseq_to_affy_moex_1_0_st_v10.3610.0000.361
MM_refseq_to_affy_mogene_1_0_st_v10.0380.0000.038
MM_refseq_to_affy_mouse430_20.0390.0000.038
MM_refseq_to_affy_mouse430a_20.0230.0030.027
MM_refseq_to_affy_mu11ksuba0.0100.0000.009
MM_refseq_to_affy_mu11ksubb0.0070.0000.007
MM_refseq_to_agilent_wholegenome0.0510.0040.056
MM_refseq_to_canonical_transcript_stable_id0.0540.0000.054
MM_refseq_to_ccds0.0230.0030.028
MM_refseq_to_codelink0.030.000.03
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0010.0000.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
MM_refseq_to_embl0.2780.0040.282
MM_refseq_to_ensembl_exon_id0.0000.0020.002
MM_refseq_to_ensembl_gene_id0.1490.0020.151
MM_refseq_to_ensembl_peptide_id0.0330.0000.033
MM_refseq_to_ensembl_transcript_id0.0350.0000.035
MM_refseq_to_entrezgene0.0320.0000.032
MM_refseq_to_fantom0.0910.0040.095
MM_refseq_to_illumina_mousewg_6_v10.0460.0000.046
MM_refseq_to_illumina_mousewg_6_v20.0480.0000.048
MM_refseq_to_interpro0.0910.0030.095
MM_refseq_to_ipi0.0000.0010.002
MM_refseq_to_merops0.0010.0020.003
MM_refseq_to_mgi_id0.0340.0000.034
MM_refseq_to_mgi_symbol0.0310.0030.035
MM_refseq_to_mgi_transcript_name0.0380.0000.038
MM_refseq_to_pdb0.0090.0000.009
MM_refseq_to_pfam0.0500.0030.055
MM_refseq_to_phalanx_onearray0.0330.0000.033
MM_refseq_to_protein_id0.2500.0070.258
MM_refseq_to_refseq_dna0.0420.0000.042
MM_refseq_to_refseq_peptide0.0710.0000.071
MM_refseq_to_rfam0.0010.0000.002
MM_refseq_to_rfam_gene_name0.0010.0000.001
MM_refseq_to_rfam_transcript_name0.0010.0000.001
MM_refseq_to_smart0.0270.0000.027
MM_refseq_to_tigrfam0.0000.0030.004
MM_refseq_to_ucsc0.0370.0000.037
MM_refseq_to_unigene0.0430.0040.047
MM_refseq_to_uniprot_genename0.0340.0000.034
MM_refseq_to_uniprot_genename_transcript_name0.0010.0000.002
MM_refseq_to_uniprot_sptrembl0.0010.0000.002
MM_refseq_to_uniprot_swissprot0.0010.0000.001
MM_refseq_to_uniprot_swissprot_accession0.0010.0000.001
MM_refseq_to_wikigene_id0.0010.0000.001
MM_refseq_to_wikigene_name0.0320.0000.032
TBL21.3210.0631.385
TBL2_HS1.5230.1321.654
TBL2_MM0.8240.1000.924
conv_id0.0000.0030.002
id_conv0.0270.0010.029