Back to Build/check report for BioC 3.17 experimental data
ABCDEFGHIJKLMNOPQRSTU[V]WXYZ

This page was generated on 2023-10-12 14:51:36 -0400 (Thu, 12 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 408/421HostnameOS / ArchINSTALLBUILDCHECK
VariantToolsData 1.24.0  (landing page)
Michael Lawrence
Snapshot Date: 2023-10-12 07:30:02 -0400 (Thu, 12 Oct 2023)
git_url: https://git.bioconductor.org/packages/VariantToolsData
git_branch: RELEASE_3_17
git_last_commit: c3c4141
git_last_commit_date: 2023-04-25 10:43:50 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

BUILD results for VariantToolsData on nebbiolo1


To the developers/maintainers of the VariantToolsData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: VariantToolsData
Version: 1.24.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data VariantToolsData
StartedAt: 2023-10-12 10:55:44 -0400 (Thu, 12 Oct 2023)
EndedAt: 2023-10-12 10:56:39 -0400 (Thu, 12 Oct 2023)
EllapsedTime: 54.7 seconds
RetCode: 0
Status:   OK  
PackageFile: VariantToolsData_1.24.0.tar.gz
PackageFileSize: 200.7 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data VariantToolsData
###
##############################################################################
##############################################################################


* checking for file ‘VariantToolsData/DESCRIPTION’ ... OK
* preparing ‘VariantToolsData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in
  serialize/load version 3 cannot be read in older versions of R.
  File(s) containing such objects:
    ‘VariantToolsData/data/geno.rda’ ‘VariantToolsData/data/repeats.rda’
    ‘VariantToolsData/data/tallies.rda’
* building ‘VariantToolsData_1.24.0.tar.gz’