############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data savR ### ############################################################################## ############################################################################## * checking for file ‘savR/DESCRIPTION’ ... OK * preparing ‘savR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘savR.Rnw’ using Sweave Loading required package: ggplot2 Warning: Package 'savR' is deprecated and will be removed from Bioconductor version 3.18 Error: processing vignette 'savR.Rnw' failed with diagnostics: chunk 10 (label = ciPlot) Error : The `position` argument of `qplot()` was deprecated in ggplot2 2.0.0 and is now defunct. --- failed re-building ‘savR.Rnw’ SUMMARY: processing the following file failed: ‘savR.Rnw’ Error: Vignette re-building failed. Execution halted