############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CancerInSilico ### ############################################################################## ############################################################################## * checking for file ‘CancerInSilico/DESCRIPTION’ ... OK * preparing ‘CancerInSilico’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘CancerInSilico’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RunModel.cpp -o RunModel.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-runner.cpp -o test-runner.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Tests/Core/test-CellType.cpp -o Tests/Core/test-CellType.o Tests/Core/test-CellType.cpp:18:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not? REQUIRE(type0.name() == "DEFAULT"); ^ Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE' #define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr ) ^ Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST' INTERNAL_CATCH_REACT( __catchResult ) \ ^ Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT' if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \ ^ Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER' #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); } ^ Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP' #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ ) ^ :1:2: note: instantiated into assembly here int $3 ^ Tests/Core/test-CellType.cpp:19:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not? REQUIRE(type0.id() == 0); ^ Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE' #define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr ) ^ Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST' INTERNAL_CATCH_REACT( __catchResult ) \ ^ Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT' if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \ ^ Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER' #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); } ^ Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP' #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ ) ^ :1:2: note: instantiated into assembly here int $3 ^ Tests/Core/test-CellType.cpp:20:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not? REQUIRE(type0.size() == 1.0); ^ Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE' #define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr ) ^ Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST' INTERNAL_CATCH_REACT( __catchResult ) \ ^ Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT' if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \ ^ Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER' #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); } ^ Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP' #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ ) ^ :1:2: note: instantiated into assembly here int $3 ^ Tests/Core/test-CellType.cpp:21:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not? REQUIRE(type0.minCycle() == 48); ^ Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE' #define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr ) ^ Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST' INTERNAL_CATCH_REACT( __catchResult ) \ ^ Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT' if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \ ^ Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER' #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); } ^ Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP' #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ ) ^ :1:2: note: instantiated into assembly here int $3 ^ Tests/Core/test-CellType.cpp:22:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not? REQUIRE(type0.cycleLength() == 48); ^ Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE' #define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr ) ^ Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST' INTERNAL_CATCH_REACT( __catchResult ) \ ^ Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT' if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \ ^ Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER' #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); } ^ Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP' #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ ) ^ :1:2: note: instantiated into assembly here int $3 ^ Tests/Core/test-CellType.cpp:28:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not? REQUIRE(type1.name() == "DOUBLE_SIZE"); ^ Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE' #define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr ) ^ Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST' INTERNAL_CATCH_REACT( __catchResult ) \ ^ Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT' if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \ ^ Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER' #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); } ^ Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP' #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ ) ^ :1:2: note: instantiated into assembly here int $3 ^ Tests/Core/test-CellType.cpp:29:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not? REQUIRE(type1.id() == 1); ^ Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE' #define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr ) ^ Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST' INTERNAL_CATCH_REACT( __catchResult ) \ ^ Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT' if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \ ^ Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER' #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); } ^ Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP' #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ ) ^ :1:2: note: instantiated into assembly here int $3 ^ Tests/Core/test-CellType.cpp:30:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not? REQUIRE(type1.size() == 2.0); ^ Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE' #define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr ) ^ Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST' INTERNAL_CATCH_REACT( __catchResult ) \ ^ Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT' if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \ ^ Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER' #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); } ^ Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP' #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ ) ^ :1:2: note: instantiated into assembly here int $3 ^ Tests/Core/test-CellType.cpp:31:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not? REQUIRE(type1.minCycle() == 48); ^ Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE' #define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr ) ^ Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST' INTERNAL_CATCH_REACT( __catchResult ) \ ^ Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT' if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \ ^ Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER' #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); } ^ Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP' #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ ) ^ :1:2: note: instantiated into assembly here int $3 ^ Tests/Core/test-CellType.cpp:32:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not? REQUIRE(type1.cycleLength() == 48); ^ Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE' #define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr ) ^ Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST' INTERNAL_CATCH_REACT( __catchResult ) \ ^ Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT' if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \ ^ Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER' #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); } ^ Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP' #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ ) ^ :1:2: note: instantiated into assembly here int $3 ^ 10 errors generated. make: *** [Tests/Core/test-CellType.o] Error 1 ERROR: compilation failed for package ‘CancerInSilico’ * removing ‘/private/tmp/RtmpTtNQ8g/Rinstf2a520276816/CancerInSilico’ ----------------------------------- ERROR: package installation failed