##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocSklearn
###
##############################################################################
##############################################################################


* checking for file ‘BiocSklearn/DESCRIPTION’ ... OK
* preparing ‘BiocSklearn’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocSklearn.Rmd’ using rmarkdown
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/BiocSklearn/1.22.0/bsklenv

  added / updated specs:
    - python=3.8.13


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-arm64::bzip2-1.0.8-h3422bc3_4
  ca-certificates    conda-forge/osx-arm64::ca-certificates-2023.7.22-hf0a4a13_0
  libffi             conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
  libsqlite          conda-forge/osx-arm64::libsqlite-3.43.2-h091b4b1_0
  libzlib            conda-forge/osx-arm64::libzlib-1.2.13-h53f4e23_5
  ncurses            conda-forge/osx-arm64::ncurses-6.4-h7ea286d_0
  openssl            conda-forge/osx-arm64::openssl-3.1.3-h53f4e23_0
  pip                conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
  python             conda-forge/osx-arm64::python-3.8.13-hd3575e6_0_cpython
  readline           conda-forge/osx-arm64::readline-8.2-h92ec313_1
  setuptools         conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
  sqlite             conda-forge/osx-arm64::sqlite-3.43.2-hf2abe2d_0
  tk                 conda-forge/osx-arm64::tk-8.6.13-hb31c410_0
  wheel              conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
  xz                 conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/BiocSklearn/1.22.0/bsklenv

  added / updated specs:
    - python=3.8.13


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-hca03da5_0

The following packages will be SUPERSEDED by a higher-priority channel:

  openssl             conda-forge::openssl-3.1.3-h53f4e23_0 --> pkgs/main::openssl-3.0.11-h1a28f6b_2


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 23.9.0

Please update conda by running

    $ conda update -n base -c defaults conda


Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - scipy=1.4.1

Current channels:

  - https://conda.anaconda.org/conda-forge/osx-arm64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://repo.anaconda.com/pkgs/main/osx-arm64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/osx-arm64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.



Quitting from lines 116-118 [dopc1] (BiocSklearn.Rmd)
Error: processing vignette 'BiocSklearn.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘BiocSklearn.Rmd’

SUMMARY: processing the following file failed:
  ‘BiocSklearn.Rmd’

Error: Vignette re-building failed.
Execution halted