############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf wppi.buildbin-libdir && mkdir wppi.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=wppi.buildbin-libdir wppi_1.8.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'wppi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading [2023-10-16 09:43:09] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2023-10-16 09:43:09] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:10] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2023-10-16 09:43:10] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-10-16 09:43:10] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2023-10-16 09:43:10] [TRACE] [OmnipathR] Contains 1 files. [2023-10-16 09:43:10] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-10-16 09:43:10] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2023-10-16 09:43:10] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:10] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2023-10-16 09:43:10] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2023-10-16 09:43:10] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-10-16 09:43:10] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:10] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-10-16 09:43:10] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:10] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-10-16 09:43:10] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:10] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-10-16 09:43:10] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:10] [TRACE] [OmnipathR] Cache locked: FALSE Note: wrong number of arguments to '/' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2023-10-16 09:43:15] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2023-10-16 09:43:15] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:15] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2023-10-16 09:43:15] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-10-16 09:43:15] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2023-10-16 09:43:15] [TRACE] [OmnipathR] Contains 1 files. [2023-10-16 09:43:15] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-10-16 09:43:15] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2023-10-16 09:43:15] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:15] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2023-10-16 09:43:15] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2023-10-16 09:43:15] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-10-16 09:43:15] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:16] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-10-16 09:43:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:16] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-10-16 09:43:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:16] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-10-16 09:43:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:16] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2023-10-16 09:43:19] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2023-10-16 09:43:19] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:19] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2023-10-16 09:43:19] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-10-16 09:43:19] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2023-10-16 09:43:19] [TRACE] [OmnipathR] Contains 1 files. [2023-10-16 09:43:19] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-10-16 09:43:19] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2023-10-16 09:43:19] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:19] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2023-10-16 09:43:19] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2023-10-16 09:43:19] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-10-16 09:43:19] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:19] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-10-16 09:43:19] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:19] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-10-16 09:43:19] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:19] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-10-16 09:43:19] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-16 09:43:19] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'wppi' as wppi_1.8.0.zip * DONE (wppi)