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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:singleCellTK.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings singleCellTK_2.10.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/singleCellTK.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.3 (clang-1403.0.22.14.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘singleCellTK/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘singleCellTK’ version ‘2.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘singleCellTK’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    extdata   1.5Mb
    shiny     2.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
plotScDblFinderResults     46.659  0.970  62.881
plotDoubletFinderResults   33.999  0.251  43.418
runScDblFinder             33.694  0.500  42.135
importExampleData          24.147  2.590  34.522
runDoubletFinder           25.401  0.219  31.954
plotBatchCorrCompare       14.431  0.182  17.783
plotScdsHybridResults      12.992  0.208  16.967
plotTSCANClusterDEG        12.328  0.230  16.490
plotBcdsResults            12.150  0.227  14.700
plotDecontXResults         11.661  0.098  15.012
plotFindMarkerHeatmap      11.003  0.058  14.721
plotEmptyDropsResults      10.523  0.055  13.998
plotEmptyDropsScatter      10.474  0.056  13.737
plotDEGViolin              10.093  0.138  12.990
runEmptyDrops               9.811  0.043  12.087
plotCxdsResults             9.090  0.076  11.235
runDecontX                  8.718  0.085  11.137
plotDEGRegression           8.668  0.087  11.277
runUMAP                     8.034  0.064   9.957
detectCellOutlier           7.807  0.199  10.230
plotUMAP                    7.894  0.075  10.038
getFindMarkerTopTable       7.256  0.171  10.209
runFindMarker               7.276  0.069   8.850
runSeuratSCTransform        7.063  0.130   8.851
plotDEGHeatmap              6.802  0.127   8.907
convertSCEToSeurat          5.927  0.271   7.425
importGeneSetsFromMSigDB    5.950  0.186   7.500
plotTSCANPseudotimeHeatmap  5.069  0.041   6.653
plotTSCANClusterPseudo      5.012  0.046   6.400
plotTSCANDimReduceFeatures  5.016  0.040   6.557
plotRunPerCellQCResults     4.929  0.038   6.482
plotTSCANPseudotimeGenes    4.873  0.036   6.351
plotTSCANResults            4.749  0.039   6.272
getTSCANResults             3.881  0.097   5.414
runCxdsBcdsHybrid           3.816  0.058   5.022
plotMASTThresholdGenes      3.670  0.045   5.033
getEnrichRResult            0.677  0.060   8.531
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.17-bioc/meat/singleCellTK.Rcheck/00check.log’
for details.