############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL sigPathway ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘sigPathway’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c calc_gene_set_internal.c -o calc_gene_set_internal.o gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c calc_gene_set_stat.c -o calc_gene_set_stat.o gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c calc_probe_stat.c -o calc_probe_stat.o gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c calc_weights.c -o calc_weights.o gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c matrix_fn.c -o matrix_fn.o In file included from /home/biocbuild/bbs-3.17-bioc/R/include/R.h:78, from sigPathway.h:18, from matrix_fn.c:13: matrix_fn.c: In function ‘matprod’: matrix_fn.c:28:16: error: too few arguments to function ‘dgemm_’ 28 | F77_CALL(dgemm)(transa, transb, &nrx, &ncy, &ncx, &one, | ^~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’ 77 | # define F77_CALL(x) x ## _ | ^ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:207:10: note: declared here 207 | F77_NAME(dgemm)(const char *transa, const char *transb, const int *m, | ^~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’ 77 | # define F77_CALL(x) x ## _ | ^ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:207:1: note: in expansion of macro ‘F77_NAME’ 207 | F77_NAME(dgemm)(const char *transa, const char *transb, const int *m, | ^~~~~~~~ matrix_fn.c: In function ‘eigen’: matrix_fn.c:65:12: error: too few arguments to function ‘dsyevr_’ 65 | F77_CALL(dsyevr)(jobv, range, uplo, &n, rx, &n, | ^~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’ 77 | # define F77_CALL(x) x ## _ | ^ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1274:10: note: declared here 1274 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo, | ^~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’ 77 | # define F77_CALL(x) x ## _ | ^ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1274:1: note: in expansion of macro ‘F77_NAME’ 1274 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo, | ^~~~~~~~ matrix_fn.c:77:12: error: too few arguments to function ‘dsyevr_’ 77 | F77_CALL(dsyevr)(jobv, range, uplo, &n, rx, &n, | ^~~~~~ matrix_fn.c:77:3: note: in expansion of macro ‘F77_CALL’ 77 | F77_CALL(dsyevr)(jobv, range, uplo, &n, rx, &n, | ^~~~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1274:10: note: declared here 1274 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo, | ^~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’ 77 | # define F77_CALL(x) x ## _ | ^ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1274:1: note: in expansion of macro ‘F77_NAME’ 1274 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo, | ^~~~~~~~ make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:191: matrix_fn.o] Error 1 ERROR: compilation failed for package ‘sigPathway’ * removing ‘/home/biocbuild/bbs-3.17-bioc/R/site-library/sigPathway’