############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL screenCounter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘screenCounter’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c count_combo_barcodes_paired.cpp -o count_combo_barcodes_paired.o In file included from count_combo_barcodes_paired.cpp:3: In file included from ../inst/include/kaori/handlers/CombinatorialBarcodesPairedEnd.hpp:4: In file included from ../inst/include/kaori/handlers/../SimpleSingleMatch.hpp:6: In file included from ../inst/include/kaori/handlers/../BarcodeSearch.hpp:5: ../inst/include/kaori/handlers/../MismatchTrie.hpp:279:22: warning: unused variable 'found' [-Wunused-variable] bool found = false; ^ ../inst/include/kaori/handlers/../MismatchTrie.hpp:465:22: warning: unused variable 'found' [-Wunused-variable] bool found = false; ^ In file included from count_combo_barcodes_paired.cpp:3: In file included from ../inst/include/kaori/handlers/CombinatorialBarcodesPairedEnd.hpp:4: In file included from ../inst/include/kaori/handlers/../SimpleSingleMatch.hpp:6: ../inst/include/kaori/handlers/../BarcodeSearch.hpp:45:14: warning: unused variable 'it' [-Wunused-variable] auto it = exact.find(current); ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c count_combo_barcodes_single.cpp -o count_combo_barcodes_single.o In file included from count_combo_barcodes_single.cpp:3: In file included from ../inst/include/kaori/handlers/CombinatorialBarcodesSingleEnd.hpp:5: In file included from ../inst/include/kaori/handlers/../BarcodeSearch.hpp:5: ../inst/include/kaori/handlers/../MismatchTrie.hpp:279:22: warning: unused variable 'found' [-Wunused-variable] bool found = false; ^ ../inst/include/kaori/handlers/../MismatchTrie.hpp:465:22: warning: unused variable 'found' [-Wunused-variable] bool found = false; ^ In file included from count_combo_barcodes_single.cpp:3: In file included from ../inst/include/kaori/handlers/CombinatorialBarcodesSingleEnd.hpp:5: ../inst/include/kaori/handlers/../BarcodeSearch.hpp:45:14: warning: unused variable 'it' [-Wunused-variable] auto it = exact.find(current); ^ In file included from count_combo_barcodes_single.cpp:3: ../inst/include/kaori/handlers/CombinatorialBarcodesSingleEnd.hpp:69:24: warning: unused variable 'len' [-Wunused-variable] size_t len = current.second - current.first; ^ ../inst/include/kaori/handlers/CombinatorialBarcodesSingleEnd.hpp:78:24: warning: unused variable 'len' [-Wunused-variable] size_t len = current.second - current.first; ^ 5 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c count_dual_barcodes.cpp -o count_dual_barcodes.o In file included from count_dual_barcodes.cpp:3: In file included from ../inst/include/kaori/handlers/DualBarcodes.hpp:5: In file included from ../inst/include/kaori/handlers/../BarcodeSearch.hpp:5: ../inst/include/kaori/handlers/../MismatchTrie.hpp:279:22: warning: unused variable 'found' [-Wunused-variable] bool found = false; ^ ../inst/include/kaori/handlers/../MismatchTrie.hpp:465:22: warning: unused variable 'found' [-Wunused-variable] bool found = false; ^ In file included from count_dual_barcodes.cpp:3: In file included from ../inst/include/kaori/handlers/DualBarcodes.hpp:5: ../inst/include/kaori/handlers/../BarcodeSearch.hpp:45:14: warning: unused variable 'it' [-Wunused-variable] auto it = exact.find(current); ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c count_random_barcodes.cpp -o count_random_barcodes.o In file included from count_random_barcodes.cpp:3: ../inst/include/kaori/handlers/RandomBarcodeSingleEnd.hpp:111:14: warning: unused variable 'found' [-Wunused-variable] bool found = false; ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c count_single_barcodes.cpp -o count_single_barcodes.o In file included from count_single_barcodes.cpp:3: In file included from ../inst/include/kaori/handlers/SingleBarcodeSingleEnd.hpp:4: In file included from ../inst/include/kaori/handlers/../SimpleSingleMatch.hpp:6: In file included from ../inst/include/kaori/handlers/../BarcodeSearch.hpp:5: ../inst/include/kaori/handlers/../MismatchTrie.hpp:279:22: warning: unused variable 'found' [-Wunused-variable] bool found = false; ^ ../inst/include/kaori/handlers/../MismatchTrie.hpp:465:22: warning: unused variable 'found' [-Wunused-variable] bool found = false; ^ In file included from count_single_barcodes.cpp:3: In file included from ../inst/include/kaori/handlers/SingleBarcodeSingleEnd.hpp:4: In file included from ../inst/include/kaori/handlers/../SimpleSingleMatch.hpp:6: ../inst/include/kaori/handlers/../BarcodeSearch.hpp:45:14: warning: unused variable 'it' [-Wunused-variable] auto it = exact.find(current); ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils.cpp -o utils.o clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o screenCounter.so RcppExports.o count_combo_barcodes_paired.o count_combo_barcodes_single.o count_dual_barcodes.o count_random_barcodes.o count_single_barcodes.o utils.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/00LOCK-screenCounter/00new/screenCounter/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (screenCounter)