Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-09-25 11:35:42 -0400 (Mon, 25 Sep 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4625 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4378 |
merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4394 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1329/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
multicrispr 1.10.1 (landing page) Aditya Bhagwat
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the multicrispr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/multicrispr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: multicrispr |
Version: 1.10.1 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:multicrispr.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings multicrispr_1.10.1.tar.gz |
StartedAt: 2023-09-24 23:12:24 -0400 (Sun, 24 Sep 2023) |
EndedAt: 2023-09-24 23:19:34 -0400 (Sun, 24 Sep 2023) |
EllapsedTime: 429.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: multicrispr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:multicrispr.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings multicrispr_1.10.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/multicrispr.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 * running under: Ubuntu 22.04.3 LTS * using session charset: UTF-8 * checking for file ‘multicrispr/DESCRIPTION’ ... OK * this is package ‘multicrispr’ version ‘1.10.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘multicrispr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed find_primespacers 15.225 1.767 17.130 score_ontargets 15.390 1.276 16.629 index_genome 16.291 0.240 16.529 find_spacers 10.334 1.606 12.010 up_flank 10.526 0.192 10.678 add_genome_matches 8.215 0.832 9.012 plot_intervals 8.162 0.728 8.913 add_target_matches 7.864 0.846 8.210 extend_for_pe 7.428 0.631 8.111 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘crispr_grna_design.Rmd’ using ‘UTF-8’... OK ‘genome_arithmetics.Rmd’ using ‘UTF-8’... OK ‘prime_editing.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
multicrispr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL multicrispr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘multicrispr’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multicrispr)
multicrispr.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(multicrispr) > > test_check("multicrispr") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 11.769 0.641 12.400
multicrispr.Rcheck/multicrispr-Ex.timings
name | user | system | elapsed | |
add_genome_matches | 8.215 | 0.832 | 9.012 | |
add_inverse_strand | 2.624 | 0.140 | 2.765 | |
add_seq | 2.023 | 0.188 | 2.210 | |
add_target_matches | 7.864 | 0.846 | 8.210 | |
bed_to_granges | 1.609 | 0.180 | 1.790 | |
char_to_granges | 0.775 | 0.000 | 0.775 | |
double_flank | 2.311 | 0.068 | 2.369 | |
extend_for_pe | 7.428 | 0.631 | 8.111 | |
extend_pe_to_gg | 0.478 | 0.032 | 0.510 | |
extract_matchranges | 2.635 | 0.292 | 2.894 | |
extract_subranges | 0.529 | 0.048 | 0.577 | |
find_gg | 1.039 | 0.100 | 1.139 | |
find_primespacers | 15.225 | 1.767 | 17.130 | |
find_spacers | 10.334 | 1.606 | 12.010 | |
genes_to_granges | 2.976 | 0.304 | 3.280 | |
gr2dt | 0.154 | 0.004 | 0.159 | |
has_been_indexed | 0 | 0 | 0 | |
index_genome | 16.291 | 0.240 | 16.529 | |
index_targets | 1.983 | 0.304 | 2.285 | |
plot_intervals | 8.162 | 0.728 | 8.913 | |
plot_karyogram | 1.068 | 0.044 | 1.112 | |
score_ontargets | 15.390 | 1.276 | 16.629 | |
up_flank | 10.526 | 0.192 | 10.678 | |
write_ranges | 0.140 | 0.008 | 0.148 | |