Davide Risso
| Snapshot Date: 2023-03-23 14:00:15 -0400 (Thu, 23 Mar 2023) |
| git_url: https://git.bioconductor.org/packages/mbkmeans |
| git_branch: devel |
| git_last_commit: 545df1c |
| git_last_commit_date: 2022-11-01 11:19:36 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-24 11:06:55 -0400 (Fri, 24 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" | 4546 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" | 4307 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" | 4299 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the mbkmeans package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbkmeans.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1121/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mbkmeans 1.15.0 (landing page) Davide Risso
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: mbkmeans |
| Version: 1.15.0 |
| Command: rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mbkmeans_1.15.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R mbkmeans.buildbin-libdir |
| StartedAt: 2023-03-24 09:28:15 -0400 (Fri, 24 Mar 2023) |
| EndedAt: 2023-03-24 09:30:49 -0400 (Fri, 24 Mar 2023) |
| EllapsedTime: 153.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: mbkmeans_1.15.0.tgz |
| PackageFileSize: 463.5 KiB |
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### Running command:
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### rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mbkmeans_1.15.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R mbkmeans.buildbin-libdir
###
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mbkmeans.buildbin-libdir mbkmeans_1.15.0.tar.gz'
>>>>>>>
* installing *source* package ‘mbkmeans’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’
using C++11
using SDK: ‘’
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rhdf5lib/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/beachmat/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/ClusterR/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rhdf5lib/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/beachmat/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/ClusterR/include' -I/usr/local/include -fPIC -Wall -g -O2 -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include/armadillo:26:
/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mbkmeans.so RcppExports.o mini_batch.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.17-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mbkmeans)
>>>>>>>
>>>>>>> FIXING LINKS FOR mbkmeans.buildbin-libdir/mbkmeans/libs/mbkmeans.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgcc_s.1.dylib" "mbkmeans.buildbin-libdir/mbkmeans/libs/mbkmeans.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgfortran.5.dylib" "mbkmeans.buildbin-libdir/mbkmeans/libs/mbkmeans.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libquadmath.0.dylib" "mbkmeans.buildbin-libdir/mbkmeans/libs/mbkmeans.so"