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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:matter.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings matter_2.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/matter.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘matter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘matter’ version ‘2.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘matter’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘matter-2-guide.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/matter.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL matter
###
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘matter’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c altrep.cpp -o altrep.o
In file included from matter.h:5,
                 from altrep.cpp:3:
atoms.h: In member function ‘AtomInfo Atoms::find_atom(index_t, int)’:
atoms.h:191:50: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare]
  191 |                                 if ( j <= i && i < j + len ) {
      |                                                ~~^~~~~~~~~
atoms.h: In member function ‘SEXPREC* Atoms::regroup_index(size_t)’:
atoms.h:644:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  644 |                         for ( index_t i = 0; i < ngroups; i++ )
      |                                              ~~^~~~~~~~~
atoms.h:654:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  654 |                         for ( index_t i = 0; i < ngroups; i++ )
      |                                              ~~^~~~~~~~~
In file included from altrep.cpp:3:
matter.h: In member function ‘void MatterArray::set_region(index_t, size_t, SEXP)’:
matter.h:178:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  178 |                         if ( size > XLENGTH(value) && stride != 0 ) {
      |                              ~~~~~^~~~~~~~~~~~~~~~
matter.h: In member function ‘SEXPREC* MatterList::get_elements(SEXP, SEXP)’:
matter.h:634:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  634 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
matter.h: In member function ‘void MatterList::set_elements(SEXP, SEXP, SEXP)’:
matter.h:658:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  658 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
matter.h: In member function ‘SEXPREC* MatterStringList::get_strings(SEXP, SEXP)’:
matter.h:730:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  730 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
matter.h: In member function ‘void MatterStringList::set_strings(SEXP, SEXP, SEXP)’:
matter.h:754:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  754 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
In file included from atoms.h:9,
                 from matter.h:5,
                 from altrep.cpp:3:
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = int; SEXP = SEXPREC*]’:
drle.h:422:53:   required from here
drle.h:209:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
drle.h:213:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = double; SEXP = SEXPREC*]’:
drle.h:583:32:   required from here
drle.h:209:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
drle.h:213:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
In file included from altrep.cpp:3:
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:153:16:   required from here
matter.h:73:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   73 |                         size = len - i > size ? size : len - i;
      |                                ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:157:16:   required from here
matter.h:73:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:165:16:   required from here
matter.h:73:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:184:16:   required from here
matter.h:96:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                         size = len - i > size ? size : len - i;
      |                                ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:187:16:   required from here
matter.h:96:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:193:16:   required from here
matter.h:96:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:399:19:   required from here
matter.h:293:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:310:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:403:19:   required from here
matter.h:293:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:310:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:411:19:   required from here
matter.h:293:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:310:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:436:19:   required from here
matter.h:348:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:367:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:439:19:   required from here
matter.h:348:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:367:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:445:19:   required from here
matter.h:348:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:367:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
In file included from atoms.h:9,
                 from matter.h:5,
                 from altrep.cpp:3:
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  533 |         while ( i < XLENGTH(indx) && j < nruns )
      |                 ~~^~~~~~~~~~~~~~~
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:15:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:599:24:   required from here
drle.h:352:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  352 |                         for ( j = 0; j < ni; j++ )
      |                                      ~~^~~~
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:15:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:603:24:   required from here
drle.h:352:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
In file included from matter.h:6,
                 from altrep.cpp:3:
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:83:20:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:153:16:   required from here
ops.h:187:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  187 |                         for ( index_t j = 0; j < size; j++ )
      |                                              ~~^~~~~~
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:83:20:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:157:16:   required from here
ops.h:187:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:83:20:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:165:16:   required from here
ops.h:187:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from altrep.cpp:2:
matterDefines.h: In instantiation of ‘size_t ArrayInterface::transpose_index(T*, SEXP, bool) [with T = long int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:116:20:   required from ‘size_t MatterArray::get_elements(SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’
matter.h:209:18:   required from here
matterDefines.h:320:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  320 |                         for ( size_t j = 0; j < XLENGTH(indx); j++ )
      |                                             ~~^~~~~~~~~~~~~~~
In file included from matter.h:5,
                 from altrep.cpp:3:
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c init.cpp -o init.o
In file included from matterExports.h:6,
                 from init.cpp:3:
atoms.h: In member function ‘AtomInfo Atoms::find_atom(index_t, int)’:
atoms.h:191:50: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare]
  191 |                                 if ( j <= i && i < j + len ) {
      |                                                ~~^~~~~~~~~
atoms.h: In member function ‘SEXPREC* Atoms::regroup_index(size_t)’:
atoms.h:644:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  644 |                         for ( index_t i = 0; i < ngroups; i++ )
      |                                              ~~^~~~~~~~~
atoms.h:654:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  654 |                         for ( index_t i = 0; i < ngroups; i++ )
      |                                              ~~^~~~~~~~~
In file included from matterExports.h:7,
                 from init.cpp:3:
matter.h: In member function ‘void MatterArray::set_region(index_t, size_t, SEXP)’:
matter.h:178:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  178 |                         if ( size > XLENGTH(value) && stride != 0 ) {
      |                              ~~~~~^~~~~~~~~~~~~~~~
matter.h: In member function ‘SEXPREC* MatterList::get_elements(SEXP, SEXP)’:
matter.h:634:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  634 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
matter.h: In member function ‘void MatterList::set_elements(SEXP, SEXP, SEXP)’:
matter.h:658:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  658 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
matter.h: In member function ‘SEXPREC* MatterStringList::get_strings(SEXP, SEXP)’:
matter.h:730:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  730 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
matter.h: In member function ‘void MatterStringList::set_strings(SEXP, SEXP, SEXP)’:
matter.h:754:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  754 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
In file included from matterExports.h:5,
                 from init.cpp:3:
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = int; SEXP = SEXPREC*]’:
drle.h:422:53:   required from here
drle.h:209:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
drle.h:213:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = double; SEXP = SEXPREC*]’:
drle.h:583:32:   required from here
drle.h:209:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
drle.h:213:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
In file included from matterExports.h:7,
                 from init.cpp:3:
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:153:16:   required from here
matter.h:73:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   73 |                         size = len - i > size ? size : len - i;
      |                                ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:157:16:   required from here
matter.h:73:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:165:16:   required from here
matter.h:73:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:184:16:   required from here
matter.h:96:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                         size = len - i > size ? size : len - i;
      |                                ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:187:16:   required from here
matter.h:96:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:193:16:   required from here
matter.h:96:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:399:19:   required from here
matter.h:293:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:310:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:403:19:   required from here
matter.h:293:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:310:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:411:19:   required from here
matter.h:293:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:310:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:436:19:   required from here
matter.h:348:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:367:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:439:19:   required from here
matter.h:348:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:367:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:445:19:   required from here
matter.h:348:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:367:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
In file included from matterExports.h:9,
                 from init.cpp:3:
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:575:30:   required from here
sparse.h:528:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
sparse.h:545:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:578:33:   required from here
sparse.h:528:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
sparse.h:545:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:588:33:   required from here
sparse.h:528:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
sparse.h:545:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:591:36:   required from here
sparse.h:528:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
sparse.h:545:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
In file included from matterExports.h:5,
                 from init.cpp:3:
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  533 |         while ( i < XLENGTH(indx) && j < nruns )
      |                 ~~^~~~~~~~~~~~~~~
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:15:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:599:24:   required from here
drle.h:352:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  352 |                         for ( j = 0; j < ni; j++ )
      |                                      ~~^~~~
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:15:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:603:24:   required from here
drle.h:352:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
In file included from matter.h:6,
                 from matterExports.h:7,
                 from init.cpp:3:
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:83:20:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:153:16:   required from here
ops.h:187:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  187 |                         for ( index_t j = 0; j < size; j++ )
      |                                              ~~^~~~~~
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:83:20:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:157:16:   required from here
ops.h:187:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:83:20:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:165:16:   required from here
ops.h:187:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from drle.h:4,
                 from matterExports.h:5,
                 from init.cpp:3:
matterDefines.h: In instantiation of ‘size_t ArrayInterface::transpose_index(T*, SEXP, bool) [with T = long int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:116:20:   required from ‘size_t MatterArray::get_elements(SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’
matter.h:209:18:   required from here
matterDefines.h:320:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  320 |                         for ( size_t j = 0; j < XLENGTH(indx); j++ )
      |                                             ~~^~~~~~~~~~~~~~~
In file included from matterExports.h:8,
                 from init.cpp:3:
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:289:31:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  225 |                         for ( index_t i = pos[j]; i < xlen; i++ )
      |                                                   ~~^~~~~~
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:293:34:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:297:32:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:307:34:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:311:37:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:315:35:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from matterExports.h:9,
                 from init.cpp:3:
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:433:27:   required from here
sparse.h:336:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |                         if ( i < 0 || i + size > sparse_extent() )
      |                                       ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:59: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |                                         if ( ii < 0 || ii >= size )
      |                                                        ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:436:30:   required from here
sparse.h:336:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |                         if ( i < 0 || i + size > sparse_extent() )
      |                                       ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:59: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |                                         if ( ii < 0 || ii >= size )
      |                                                        ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’
sparse.h:446:30:   required from here
sparse.h:336:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |                         if ( i < 0 || i + size > sparse_extent() )
      |                                       ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:59: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |                                         if ( ii < 0 || ii >= size )
      |                                                        ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’
sparse.h:449:33:   required from here
sparse.h:336:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |                         if ( i < 0 || i + size > sparse_extent() )
      |                                       ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:59: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |                                         if ( ii < 0 || ii >= size )
      |                                                        ~~~^~~~~~~
In file included from matterExports.h:6,
                 from init.cpp:3:
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:31:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:29:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:32:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:31:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:29:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:32:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
In file included from search.h:5,
                 from matterExports.h:8,
                 from init.cpp:3:
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:289:31:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   97 |                 for ( index_t i = init; i < end && i >= 0; i += k )
      |                                         ~~^~~~~
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:293:34:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:297:32:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:307:34:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:311:37:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:315:35:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from matterExports.h:9,
                 from init.cpp:3:
sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = int; index_t = long int; size_t = long unsigned int]’:
sparse.h:349:22:   required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:433:27:   required from here
sparse.h:190:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  190 |                         if ( i < 0 || i + size > sparse_extent() )
      |                                       ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = double; index_t = long int; size_t = long unsigned int]’:
sparse.h:349:22:   required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:436:30:   required from here
sparse.h:190:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
In file included from init.cpp:4:
altrep.h: At global scope:
altrep.h:18:25: warning: ‘matter_altstring’ defined but not used [-Wunused-variable]
   18 | static R_altrep_class_t matter_altstring;
      |                         ^~~~~~~~~~~~~~~~
altrep.h:17:25: warning: ‘matter_altreal’ defined but not used [-Wunused-variable]
   17 | static R_altrep_class_t matter_altreal;
      |                         ^~~~~~~~~~~~~~
altrep.h:16:25: warning: ‘matter_altinteger’ defined but not used [-Wunused-variable]
   16 | static R_altrep_class_t matter_altinteger;
      |                         ^~~~~~~~~~~~~~~~~
altrep.h:15:25: warning: ‘matter_altlogical’ defined but not used [-Wunused-variable]
   15 | static R_altrep_class_t matter_altlogical;
      |                         ^~~~~~~~~~~~~~~~~
altrep.h:14:25: warning: ‘matter_altraw’ defined but not used [-Wunused-variable]
   14 | static R_altrep_class_t matter_altraw;
      |                         ^~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c matterExports.cpp -o matterExports.o
In file included from matterExports.h:6,
                 from matterExports.cpp:2:
atoms.h: In member function ‘AtomInfo Atoms::find_atom(index_t, int)’:
atoms.h:191:50: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare]
  191 |                                 if ( j <= i && i < j + len ) {
      |                                                ~~^~~~~~~~~
atoms.h: In member function ‘SEXPREC* Atoms::regroup_index(size_t)’:
atoms.h:644:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  644 |                         for ( index_t i = 0; i < ngroups; i++ )
      |                                              ~~^~~~~~~~~
atoms.h:654:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  654 |                         for ( index_t i = 0; i < ngroups; i++ )
      |                                              ~~^~~~~~~~~
In file included from matterExports.h:7,
                 from matterExports.cpp:2:
matter.h: In member function ‘void MatterArray::set_region(index_t, size_t, SEXP)’:
matter.h:178:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  178 |                         if ( size > XLENGTH(value) && stride != 0 ) {
      |                              ~~~~~^~~~~~~~~~~~~~~~
matter.h: In member function ‘SEXPREC* MatterList::get_elements(SEXP, SEXP)’:
matter.h:634:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  634 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
matter.h: In member function ‘void MatterList::set_elements(SEXP, SEXP, SEXP)’:
matter.h:658:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  658 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
matter.h: In member function ‘SEXPREC* MatterStringList::get_strings(SEXP, SEXP)’:
matter.h:730:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  730 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
matter.h: In member function ‘void MatterStringList::set_strings(SEXP, SEXP, SEXP)’:
matter.h:754:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  754 |                         for ( size_t k = 0; k < len; k++ )
      |                                             ~~^~~~~
In file included from matterExports.h:5,
                 from matterExports.cpp:2:
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = int; SEXP = SEXPREC*]’:
drle.h:422:53:   required from here
drle.h:209:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
drle.h:213:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = double; SEXP = SEXPREC*]’:
drle.h:583:32:   required from here
drle.h:209:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
drle.h:213:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |                                                 for ( size_t i = 0; i < _truelength; i++ )
      |                                                                     ~~^~~~~~~~~~~~~
In file included from matterExports.h:7,
                 from matterExports.cpp:2:
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:153:16:   required from here
matter.h:73:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   73 |                         size = len - i > size ? size : len - i;
      |                                ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:157:16:   required from here
matter.h:73:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:165:16:   required from here
matter.h:73:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:184:16:   required from here
matter.h:96:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                         size = len - i > size ? size : len - i;
      |                                ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:187:16:   required from here
matter.h:96:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:193:16:   required from here
matter.h:96:40: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:399:19:   required from here
matter.h:293:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:310:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:403:19:   required from here
matter.h:293:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:310:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:411:19:   required from here
matter.h:293:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:310:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:436:19:   required from here
matter.h:348:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:367:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:439:19:   required from here
matter.h:348:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:367:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:445:19:   required from here
matter.h:348:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
matter.h:367:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
In file included from matterExports.h:9,
                 from matterExports.cpp:2:
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:575:30:   required from here
sparse.h:528:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
sparse.h:545:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:578:33:   required from here
sparse.h:528:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
sparse.h:545:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:588:33:   required from here
sparse.h:528:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
sparse.h:545:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:591:36:   required from here
sparse.h:528:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |                                 for ( size_t k = 0; k < nr; k++ )
      |                                                     ~~^~~~
sparse.h:545:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |                                 for ( size_t k = 0; k < nc; k++ )
      |                                                     ~~^~~~
In file included from matterExports.h:6,
                 from matterExports.cpp:2:
atoms.h: In instantiation of ‘SEXPREC* Atoms::subset_index(T*, size_t, bool) [with T = int; SEXP = SEXPREC*; size_t = long unsigned int]’:
matterExports.cpp:172:31:   required from here
atoms.h:552:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  552 |                                 while ( i < size )
      |                                         ~~^~~~~~
atoms.h:572:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  572 |                                 while ( i < size )
      |                                         ~~^~~~~~
atoms.h: In instantiation of ‘SEXPREC* Atoms::subset_index(T*, size_t, bool) [with T = double; SEXP = SEXPREC*; size_t = long unsigned int]’:
matterExports.cpp:174:34:   required from here
atoms.h:552:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  552 |                                 while ( i < size )
      |                                         ~~^~~~~~
atoms.h:572:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  572 |                                 while ( i < size )
      |                                         ~~^~~~~~
In file included from search.h:5,
                 from matterExports.h:8,
                 from matterExports.cpp:2:
signal.h: In instantiation of ‘void bin_vector(T*, int, int*, int*, double*, int, int) [with T = int]’:
matterExports.cpp:287:14:   required from here
signal.h:239:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  239 |         for ( size_t i = 0; i < nbin; i++ ) {
      |                             ~~^~~~~~
signal.h:245:50: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  245 |                 for ( size_t j = lower[i] - 1; j < upper[i] && j < n; j++ )
      |                                                ~~^~~~~~~~~~
signal.h:245:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  245 |                 for ( size_t j = lower[i] - 1; j < upper[i] && j < n; j++ )
      |                                                                ~~^~~
signal.h: In instantiation of ‘void bin_vector(T*, int, int*, int*, double*, int, int) [with T = double]’:
matterExports.cpp:291:14:   required from here
signal.h:239:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  239 |         for ( size_t i = 0; i < nbin; i++ ) {
      |                             ~~^~~~~~
signal.h:245:50: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  245 |                 for ( size_t j = lower[i] - 1; j < upper[i] && j < n; j++ )
      |                                                ~~^~~~~~~~~~
signal.h:245:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  245 |                 for ( size_t j = lower[i] - 1; j < upper[i] && j < n; j++ )
      |                                                                ~~^~~
signal.h: In instantiation of ‘size_t local_maxima(T*, size_t, int, int*) [with T = int; size_t = long unsigned int]’:
matterExports.cpp:307:16:   required from here
signal.h:272:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  272 |         for ( int i = 0; i < n; i++ )
      |                          ~~^~~
signal.h:275:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  275 |                 if ( i < r || i > n - r )
      |                               ~~^~~~~~~
signal.h:278:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  278 |                 b = (i + r) < n - 1 ? (i + r) : n - 1;
      |                     ~~~~~~~~^~~~~~~
signal.h: In instantiation of ‘size_t local_maxima(T*, size_t, int, int*) [with T = double; size_t = long unsigned int]’:
matterExports.cpp:311:16:   required from here
signal.h:272:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  272 |         for ( int i = 0; i < n; i++ )
      |                          ~~^~~
signal.h:275:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  275 |                 if ( i < r || i > n - r )
      |                               ~~^~~~~~~
signal.h:278:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  278 |                 b = (i + r) < n - 1 ? (i + r) : n - 1;
      |                     ~~~~~~~~^~~~~~~
signal.h: In instantiation of ‘size_t peak_boundaries(T*, size_t, int, int*, size_t, int*, int*) [with T = int; size_t = long unsigned int]’:
matterExports.cpp:329:19:   required from here
signal.h:304:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  304 |         for ( int i = 0; i < npeaks; i++ )
      |                          ~~^~~~~~~~
signal.h:329:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  329 |                 for ( int j = peaks[i] + 1; j < n; j++ )
      |                                             ~~^~~
signal.h:335:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  335 |                                 int b = (j + r) < n - 1 ? (j + r) : n - 1;
      |                                         ~~~~~~~~^~~~~~~
signal.h: In instantiation of ‘size_t peak_boundaries(T*, size_t, int, int*, size_t, int*, int*) [with T = double; size_t = long unsigned int]’:
matterExports.cpp:334:19:   required from here
signal.h:304:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  304 |         for ( int i = 0; i < npeaks; i++ )
      |                          ~~^~~~~~~~
signal.h:329:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  329 |                 for ( int j = peaks[i] + 1; j < n; j++ )
      |                                             ~~^~~
signal.h:335:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  335 |                                 int b = (j + r) < n - 1 ? (j + r) : n - 1;
      |                                         ~~~~~~~~^~~~~~~
In file included from matterExports.h:5,
                 from matterExports.cpp:2:
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  533 |         while ( i < XLENGTH(indx) && j < nruns )
      |                 ~~^~~~~~~~~~~~~~~
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:22:   required from here
drle.h:533:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:15:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:599:24:   required from here
drle.h:352:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  352 |                         for ( j = 0; j < ni; j++ )
      |                                      ~~^~~~
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:15:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:603:24:   required from here
drle.h:352:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
In file included from matter.h:6,
                 from matterExports.h:7,
                 from matterExports.cpp:2:
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:83:20:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:153:16:   required from here
ops.h:187:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  187 |                         for ( index_t j = 0; j < size; j++ )
      |                                              ~~^~~~~~
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:83:20:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:157:16:   required from here
ops.h:187:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:83:20:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:165:16:   required from here
ops.h:187:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from drle.h:4,
                 from matterExports.h:5,
                 from matterExports.cpp:2:
matterDefines.h: In instantiation of ‘size_t ArrayInterface::transpose_index(T*, SEXP, bool) [with T = long int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:116:20:   required from ‘size_t MatterArray::get_elements(SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’
matter.h:209:18:   required from here
matterDefines.h:320:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  320 |                         for ( size_t j = 0; j < XLENGTH(indx); j++ )
      |                                             ~~^~~~~~~~~~~~~~~
In file included from matterExports.h:8,
                 from matterExports.cpp:2:
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:289:31:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  225 |                         for ( index_t i = pos[j]; i < xlen; i++ )
      |                                                   ~~^~~~~~
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:293:34:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:297:32:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:307:34:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:311:37:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:315:35:   required from here
search.h:225:53: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from matterExports.h:9,
                 from matterExports.cpp:2:
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:433:27:   required from here
sparse.h:336:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |                         if ( i < 0 || i + size > sparse_extent() )
      |                                       ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:59: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |                                         if ( ii < 0 || ii >= size )
      |                                                        ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:436:30:   required from here
sparse.h:336:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |                         if ( i < 0 || i + size > sparse_extent() )
      |                                       ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:59: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |                                         if ( ii < 0 || ii >= size )
      |                                                        ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’
sparse.h:446:30:   required from here
sparse.h:336:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |                         if ( i < 0 || i + size > sparse_extent() )
      |                                       ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:59: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |                                         if ( ii < 0 || ii >= size )
      |                                                        ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’
sparse.h:449:33:   required from here
sparse.h:336:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |                         if ( i < 0 || i + size > sparse_extent() )
      |                                       ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:59: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |                                         if ( ii < 0 || ii >= size )
      |                                                        ~~~^~~~~~~
In file included from matterExports.h:6,
                 from matterExports.cpp:2:
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:22:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:22:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:22:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:22:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:22:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:22:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:22:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:22:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:22:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:22:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:20:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:20:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:20:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:20:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:20:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:20:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:20:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:20:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:20:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:20:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:23:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:23:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:23:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:23:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:23:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:23:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:23:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:23:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:23:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:23:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:22:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:22:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:22:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:22:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:22:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:22:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:22:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:22:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:22:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:22:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:20:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:20:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:20:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:20:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:20:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:20:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:20:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:20:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:20:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:20:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:23:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:23:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:23:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:23:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:23:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:23:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:23:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:23:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:23:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:23:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:30:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:39:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:33:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:34:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:31:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:32:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:20:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:30:   required from here
atoms.h:279:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:31:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:40:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:34:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:35:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:32:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:33:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:20:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:36:   required from here
atoms.h:298:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |                         if ( pos + size >= extent(atom) )
      |                              ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:48: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |                         for ( index_t i = 0; i < size; i++ )
      |                                              ~~^~~~~~
In file included from search.h:5,
                 from matterExports.h:8,
                 from matterExports.cpp:2:
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:289:31:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   97 |                 for ( index_t i = init; i < end && i >= 0; i += k )
      |                                         ~~^~~~~
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:293:34:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:297:32:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:307:34:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:311:37:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:315:35:   required from here
signal.h:97:43: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from matterExports.h:9,
                 from matterExports.cpp:2:
sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = int; index_t = long int; size_t = long unsigned int]’:
sparse.h:349:22:   required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:433:27:   required from here
sparse.h:190:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  190 |                         if ( i < 0 || i + size > sparse_extent() )
      |                                       ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = double; index_t = long int; size_t = long unsigned int]’:
sparse.h:349:22:   required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:402:43:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:436:30:   required from here
sparse.h:190:48: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
In file included from matterExports.h:8,
                 from matterExports.cpp:2:
search.h: In function ‘index_t binary_search(T, T*, size_t, size_t, double, int, int, bool, bool, int) [with T = int]’:
search.h:104:41: warning: ‘delta’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  104 |                 else if ( (mid == right && delta > 0) && (nearest || dright <= tol) )
      |                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~
search.h: In function ‘index_t binary_search(T, T*, size_t, size_t, double, int, int, bool, bool, int) [with T = double]’:
search.h:104:41: warning: ‘delta’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  104 |                 else if ( (mid == right && delta > 0) && (nearest || dright <= tol) )
      |                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~
search.h: In function ‘index_t binary_search(T, T*, size_t, size_t, double, int, int, bool, bool, int) [with T = SEXPREC*]’:
search.h:104:41: warning: ‘delta’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  104 |                 else if ( (mid == right && delta > 0) && (nearest || dright <= tol) )
      |                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o matter.so altrep.o init.o matterExports.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-matter/00new/matter/libs
** R
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘apply’ in package ‘matter’
Creating a new generic function for ‘scale’ in package ‘matter’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (matter)

R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'license()' or 'licence()' for distribution details.

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> library(testthat)
> library(matter)
Loading required package: BiocParallel
Loading required package: Matrix

Attaching package: 'matter'

The following objects are masked from 'package:base':

    apply, scale

> 
> test_check("matter")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 725 ]
> 
> proc.time()
   user  system elapsed 
 10.102   0.330  10.421