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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data glmSparseNet
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* checking for file ‘glmSparseNet/DESCRIPTION’ ... OK
* preparing ‘glmSparseNet’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘example_brca_logistic.Rmd’ using rmarkdown

Quitting from lines 54-57 [unnamed-chunk-2] (example_brca_logistic.Rmd)
Error: processing vignette 'example_brca_logistic.Rmd' failed with diagnostics:
failed to load resource
  name: EH596
  title: BRCA_RNASeq2GeneNorm-20160128
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded
--- failed re-building ‘example_brca_logistic.Rmd’

--- re-building ‘example_brca_protein-protein-interactions_survival.Rmd’ using rmarkdown

Quitting from lines 135-138 [unnamed-chunk-8] (example_brca_protein-protein-interactions_survival.Rmd)
Error: processing vignette 'example_brca_protein-protein-interactions_survival.Rmd' failed with diagnostics:
failed to load resource
  name: EH596
  title: BRCA_RNASeq2GeneNorm-20160128
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded
--- failed re-building ‘example_brca_protein-protein-interactions_survival.Rmd’

--- re-building ‘example_brca_survival.Rmd’ using rmarkdown

Quitting from lines 54-57 [curated_data] (example_brca_survival.Rmd)
Error: processing vignette 'example_brca_survival.Rmd' failed with diagnostics:
failed to load resource
  name: EH596
  title: BRCA_RNASeq2GeneNorm-20160128
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded
--- failed re-building ‘example_brca_survival.Rmd’

--- re-building ‘example_prad_survival.Rmd’ using rmarkdown
--- finished re-building ‘example_prad_survival.Rmd’

--- re-building ‘example_skcm_survival.Rmd’ using rmarkdown
--- finished re-building ‘example_skcm_survival.Rmd’

--- re-building ‘separate2GroupsCox.Rmd’ using rmarkdown
--- finished re-building ‘separate2GroupsCox.Rmd’

SUMMARY: processing the following files failed:
  ‘example_brca_logistic.Rmd’
  ‘example_brca_protein-protein-interactions_survival.Rmd’
  ‘example_brca_survival.Rmd’

Error: Vignette re-building failed.
Execution halted