Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-10-16 11:36:10 -0400 (Mon, 16 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 778/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
genefu 2.32.0 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the genefu package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genefu.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: genefu |
Version: 2.32.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:genefu.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings genefu_2.32.0.tar.gz |
StartedAt: 2023-10-16 02:25:46 -0400 (Mon, 16 Oct 2023) |
EndedAt: 2023-10-16 02:28:15 -0400 (Mon, 16 Oct 2023) |
EllapsedTime: 149.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: genefu.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:genefu.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings genefu_2.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/genefu.Rcheck' * using R version 4.3.1 (2023-06-16 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'genefu/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'genefu' version '2.32.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'genefu' can be installed ... OK * checking installed package size ... NOTE installed size is 5.2Mb sub-directories of 1Mb or more: data 4.0Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'AIMS' 'biomaRt' 'iC10' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. Unexported objects imported by ':::' calls: 'mclust:::grid1' 'mclust:::grid2' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'F:/biocbuild/bbs-3.17-bioc/meat/genefu.Rcheck/00check.log' for details.
genefu.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL genefu ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'genefu' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (genefu)
genefu.Rcheck/genefu-Ex.timings
name | user | system | elapsed | |
bimod | 0.25 | 0.05 | 0.29 | |
boxplotplus2 | 0 | 0 | 0 | |
claudinLow | 1.11 | 0.01 | 1.13 | |
compareProtoCor | 1.19 | 0.03 | 1.21 | |
compute.pairw.cor.meta | 1.30 | 0.04 | 1.33 | |
compute.proto.cor.meta | 1.12 | 0.03 | 1.16 | |
cordiff.dep | 0.11 | 0.01 | 0.12 | |
endoPredict | 0.09 | 0.02 | 0.11 | |
fuzzy.ttest | 0.08 | 0.01 | 0.10 | |
gene70 | 0.24 | 0.00 | 0.23 | |
gene76 | 0.11 | 0.02 | 0.13 | |
geneid.map | 0.12 | 0.02 | 0.14 | |
genius | 0.16 | 0.07 | 0.23 | |
ggi | 0.09 | 0.02 | 0.11 | |
ihc4 | 0.11 | 0.01 | 0.13 | |
intrinsic.cluster | 0.38 | 0.02 | 0.40 | |
intrinsic.cluster.predict | 0.14 | 0.03 | 0.17 | |
map.datasets | 1.06 | 0.05 | 1.11 | |
molecular.subtyping | 2.26 | 0.14 | 2.57 | |
npi | 0.10 | 0.01 | 0.10 | |
oncotypedx | 0.11 | 0.02 | 0.13 | |
ovcAngiogenic | 0.12 | 0.02 | 0.14 | |
ovcCrijns | 0.11 | 0.03 | 0.14 | |
ovcTCGA | 0.24 | 0.03 | 0.27 | |
ovcYoshihara | 0.11 | 0.01 | 0.12 | |
pik3cags | 0.12 | 0.02 | 0.14 | |
power.cor | 0 | 0 | 0 | |
ps.cluster | 0.34 | 0.02 | 0.36 | |
read.m.file | 0.02 | 0.01 | 0.03 | |
rename.duplicate | 0 | 0 | 0 | |
rescale | 0.25 | 0.00 | 0.25 | |
rorS | 0.18 | 0.02 | 0.20 | |
setcolclass.df | 0.02 | 0.00 | 0.02 | |
sig.score | 0.12 | 0.00 | 0.12 | |
spearmanCI | 0 | 0 | 0 | |
st.gallen | 0.1 | 0.0 | 0.1 | |
stab.fs | 0.09 | 0.00 | 0.09 | |
stab.fs.ranking | 0.77 | 0.03 | 0.80 | |
strescR | 0 | 0 | 0 | |
subtype.cluster | 0.64 | 0.04 | 0.68 | |
subtype.cluster.predict | 0.23 | 0.04 | 0.27 | |
tamr13 | 0.14 | 0.00 | 0.14 | |
tbrm | 0 | 0 | 0 | |
weighted.meanvar | 0 | 0 | 0 | |
write.m.file | 0.00 | 0.01 | 0.02 | |