############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dasper ### ############################################################################## ############################################################################## * checking for file ‘dasper/DESCRIPTION’ ... OK * preparing ‘dasper’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘dasper.Rmd’ using rmarkdown unsorted interval: chr21 26021921 26022042 , falling back to slower matching (doesn't affect BAM processing) For potentially faster BigWig reading performance, please sort your argument to --annotations (BED) file via sort -k1,1 -k2,2n and re-run megadepth. building whole annotation region map done 2 chromosomes for annotated regions read 1 chromosomes for annotated regions read, collapsed total number of annotations in collapsed: 84 Processing /Users/biocbuild/Library/Caches/org.R-project.R/R/BiocFileCache/ef4716b3188c_SRR660824_SRS389722_SRX222703_male_lung.bw Quitting from lines 262-269 [coverage_norm] (dasper.Rmd) Error: processing vignette 'dasper.Rmd' failed with diagnostics: BiocParallel errors 1 remote errors, element index: 1 1 unevaluated and other errors first remote error: Error in vroom_(file, delim = delim %||% col_types$delim, col_names = col_names, : bad value --- failed re-building ‘dasper.Rmd’ SUMMARY: processing the following file failed: ‘dasper.Rmd’ Error: Vignette re-building failed. Execution halted