############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL clipper ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'clipper' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'RBGL::maxClique' by 'gRbase::maxClique' when loading 'clipper' Warning: replacing previous import 'graph::addEdge' by 'gRbase::addEdge' when loading 'clipper' Warning: replacing previous import 'KEGGgraph::subGraph' by 'gRbase::subGraph' when loading 'clipper' Warning: replacing previous import 'KEGGgraph::nodes' by 'gRbase::nodes' when loading 'clipper' Warning: replacing previous import 'graph::connComp' by 'gRbase::connComp' when loading 'clipper' Warning: replacing previous import 'KEGGgraph::edges' by 'gRbase::edges' when loading 'clipper' Warning: replacing previous import 'graph::adj' by 'gRbase::adj' when loading 'clipper' Warning: replacing previous import 'graph::removeEdge' by 'gRbase::removeEdge' when loading 'clipper' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'RBGL::maxClique' by 'gRbase::maxClique' when loading 'clipper' Warning: replacing previous import 'graph::addEdge' by 'gRbase::addEdge' when loading 'clipper' Warning: replacing previous import 'KEGGgraph::subGraph' by 'gRbase::subGraph' when loading 'clipper' Warning: replacing previous import 'KEGGgraph::nodes' by 'gRbase::nodes' when loading 'clipper' Warning: replacing previous import 'graph::connComp' by 'gRbase::connComp' when loading 'clipper' Warning: replacing previous import 'KEGGgraph::edges' by 'gRbase::edges' when loading 'clipper' Warning: replacing previous import 'graph::adj' by 'gRbase::adj' when loading 'clipper' Warning: replacing previous import 'graph::removeEdge' by 'gRbase::removeEdge' when loading 'clipper' ** testing if installed package can be loaded from final location Warning: replacing previous import 'RBGL::maxClique' by 'gRbase::maxClique' when loading 'clipper' Warning: replacing previous import 'graph::addEdge' by 'gRbase::addEdge' when loading 'clipper' Warning: replacing previous import 'KEGGgraph::subGraph' by 'gRbase::subGraph' when loading 'clipper' Warning: replacing previous import 'KEGGgraph::nodes' by 'gRbase::nodes' when loading 'clipper' Warning: replacing previous import 'graph::connComp' by 'gRbase::connComp' when loading 'clipper' Warning: replacing previous import 'KEGGgraph::edges' by 'gRbase::edges' when loading 'clipper' Warning: replacing previous import 'graph::adj' by 'gRbase::adj' when loading 'clipper' Warning: replacing previous import 'graph::removeEdge' by 'gRbase::removeEdge' when loading 'clipper' ** testing if installed package keeps a record of temporary installation path * DONE (clipper)