############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:casper.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings casper_2.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/casper.Rcheck' * using R version 4.3.1 (2023-06-16 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'casper/DESCRIPTION' ... OK * this is package 'casper' version '2.34.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'casper' can be installed ... WARNING Found the following significant warnings: cstat.cpp:1110:20: warning: comparing the result of pointer addition '(v + ((sizetype)(((long long unsigned int)nl) * 4)))' and NULL [-Waddress] cstat.cpp:1116:20: warning: comparing the result of pointer addition '(v + ((sizetype)(((long long unsigned int)nl) * 8)))' and NULL [-Waddress] cstat.cpp:1122:20: warning: comparing the result of pointer addition '(v + ((sizetype)(((long long unsigned int)nl) * 4)))' and NULL [-Waddress] cstat.cpp:1130:47: warning: comparing the result of pointer addition '((*(m + ((sizetype)(((long long unsigned int)i) * 8)))) + ((sizetype)(((long long unsigned int)ncl) * 8)))' and NULL [-Waddress] cstat.cpp:1132:21: warning: comparing the result of pointer addition '(m + ((sizetype)(((long long unsigned int)nrl) * 8)))' and NULL [-Waddress] cstat.cpp:1140:47: warning: comparing the result of pointer addition '((*(m + ((sizetype)(((long long unsigned int)i) * 8)))) + ((sizetype)(((long long unsigned int)ncl) * 4)))' and NULL [-Waddress] cstat.cpp:1142:21: warning: comparing the result of pointer addition '(m + ((sizetype)(((long long unsigned int)nrl) * 8)))' and NULL [-Waddress] model.cpp:147:24: warning: 'sprintf' argument 3 overlaps destination object '' [-Wrestrict] seppel.cpp:484:9: warning: array subscript -1 is outside array bounds of 'void [24]' [-Warray-bounds] seppel.cpp:484:19: warning: 'void operator delete [](void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] variant.cpp:164:52: warning: 'sprintf' argument 3 overlaps destination object 'str' [-Wrestrict] See 'F:/biocbuild/bbs-3.17-bioc/meat/casper.Rcheck/00install.out' for details. * used C compiler: 'gcc.exe (GCC) 12.2.0' * used C++ compiler: 'G__~1.EXE (GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See 'F:/biocbuild/bbs-3.17-bioc/meat/casper.Rcheck/00check.log' for details.