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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:biodbKegg.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings biodbKegg_1.6.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/biodbKegg.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘biodbKegg/DESCRIPTION’ ... OK
* this is package ‘biodbKegg’ version ‘1.6.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbKegg’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
KeggEnzymeConn   18.579  0.789 127.643
KeggPathwayConn   6.830  0.309  49.687
KeggCompoundConn  2.963  0.135  14.540
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # vi: fdm=marker
  > # Script needed to run testthat automatically from ‘R CMD check’. See
  > # testthat::test_dir documentation.
  > library(testthat)
  > library(biodbKegg)
  > Sys.setenv(TESTTHAT_REPORTER = "summary")
  > test_check("biodbKegg")
  Error in brio::read_lines(path) : 
    Could not open file: /home/biocbuild/bbs-3.17-bioc/meat/biodbKegg.Rcheck/tests/testthat/test_600_pathway.R
  Calls: test_check ... doTryCatch -> lapply -> FUN -> source_file -> <Anonymous>
  Execution halted
  sh: error while loading shared libraries: libc.so.6: cannot open shared object file: Error 24
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘biodbKegg.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘biodbKegg.Rmd’ using rmarkdown

Quitting from lines 95-96 [Calling addInfo()] (biodbKegg.Rmd)
Error: processing vignette 'biodbKegg.Rmd' failed with diagnostics:
attempt to apply non-function
--- failed re-building ‘biodbKegg.Rmd’

SUMMARY: processing the following file failed:
  ‘biodbKegg.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/biodbKegg.Rcheck/00check.log’
for details.