############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r Travel -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Travel ### ############################################################################## ############################################################################## * checking for file 'Travel/DESCRIPTION' ... OK * preparing 'Travel': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package 'Travel' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' using C++11 g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Cpp_interface.cpp -o Cpp_interface.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altfile_operations.cpp -o altfile_operations.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altmmap_operations.cpp -o altmmap_operations.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altrep_manager.cpp -o altrep_manager.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c class_Cache_block.cpp -o class_Cache_block.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c class_Filesystem_cache_copier.cpp -o class_Filesystem_cache_copier.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.1\include" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c class_Filesystem_file_data.cpp -o class_Filesystem_file_data.o In file included from class_Filesystem_file_data.h:5, from class_Filesystem_file_data.cpp:1: class_Cache_block.h:10:5: error: 'size_t' does not name a type 10 | size_t size; | ^~~~~~ class_Cache_block.h:1:1: note: 'size_t' is defined in header ''; did you forget to '#include '? +++ |+#include 1 | #ifndef HEADER_CACHE_BLOCK class_Cache_block.h:11:5: error: 'size_t' does not name a type 11 | size_t *counter = nullptr; | ^~~~~~ class_Cache_block.h:11:5: note: 'size_t' is defined in header ''; did you forget to '#include '? class_Cache_block.h:14:23: error: expected ')' before 'size' 14 | Cache_block(size_t size); | ~ ^~~~~ | ) class_Cache_block.h:21:5: error: 'size_t' does not name a type 21 | size_t use_count() const; | ^~~~~~ class_Cache_block.h:21:5: note: 'size_t' is defined in header ''; did you forget to '#include '? class_Cache_block.h:23:5: error: 'size_t' does not name a type 23 | size_t get_size() const; | ^~~~~~ class_Cache_block.h:23:5: note: 'size_t' is defined in header ''; did you forget to '#include '? class_Cache_block.h:27:5: error: 'size_t' does not name a type 27 | size_t get_serialize_size() const; | ^~~~~~ class_Cache_block.h:27:5: note: 'size_t' is defined in header ''; did you forget to '#include '? class_Filesystem_file_data.cpp: In member function 'size_t Filesystem_file_data::get_serialize_size()': class_Filesystem_file_data.cpp:70:26: error: 'const class Cache_block' has no member named 'get_serialize_size' 70 | size += i.second.get_serialize_size(); | ^~~~~~~~~~~~~~~~~~ class_Filesystem_file_data.cpp: In member function 'void Filesystem_file_data::serialize(void*)': class_Filesystem_file_data.cpp:92:39: error: 'const class Cache_block' has no member named 'get_serialize_size' 92 | size_t buffer_size = i.second.get_serialize_size(); | ^~~~~~~~~~~~~~~~~~ class_Filesystem_file_data.cpp: In member function 'void Filesystem_cache_index_iterator::compute_block_info()': class_Filesystem_file_data.cpp:177:39: error: 'class Cache_block' has no member named 'get_size' 177 | block_length = block_iter->second.get_size() / type_size; | ^~~~~~~~ make: *** [F:/biocbuild/bbs-3.17-bioc/R/etc/x64/Makeconf:272: class_Filesystem_file_data.o] Error 1 ERROR: compilation failed for package 'Travel' * removing 'F:/biocbuild/bbs-3.17-bioc/tmpdir/RtmpuO1ZYn/Rinst1c8051e82e53/Travel' ----------------------------------- ERROR: package installation failed