############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SparseArray.buildbin-libdir && mkdir SparseArray.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=SparseArray.buildbin-libdir SparseArray_1.0.12.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'SparseArray' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.2.0' gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ExtendableJaggedArray.c -o ExtendableJaggedArray.o ExtendableJaggedArray.c: In function '_move_ExtendableJaggedArrays_to_SVT': ExtendableJaggedArray.c:142:25: warning: 'vals' may be used uninitialized [-Wmaybe-uninitialized] 142 | free(vals); | ^~~~~~~~~~ ExtendableJaggedArray.c:120:21: note: 'vals' was declared here 120 | int *offs, *vals; | ^~~~ ExtendableJaggedArray.c:138:25: warning: 'offs' may be used uninitialized [-Wmaybe-uninitialized] 138 | free(offs); | ^~~~~~~~~~ ExtendableJaggedArray.c:120:14: note: 'offs' was declared here 120 | int *offs, *vals; | ^~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_SparseArray.c -o R_init_SparseArray.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rvector_summarization.c -o Rvector_summarization.o Rvector_summarization.c:1274:12: warning: 'count_NA_list_elts' defined but not used [-Wunused-function] 1274 | static int count_NA_list_elts(SEXP x) | ^~~~~~~~~~~~~~~~~~ Rvector_summarization.c:1262:12: warning: 'any_NA_list_elt' defined but not used [-Wunused-function] 1262 | static int any_NA_list_elt(SEXP x) | ^~~~~~~~~~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rvector_utils.c -o Rvector_utils.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SBT_utils.c -o SBT_utils.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SVT_SparseArray_class.c -o SVT_SparseArray_class.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseArray_Complex_methods.c -o SparseArray_Complex_methods.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseArray_Math_methods.c -o SparseArray_Math_methods.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseArray_Ops_methods.c -o SparseArray_Ops_methods.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseArray_abind.c -o SparseArray_abind.o In function 'concatenate_leaf_vectors', inlined from 'REC_abind_SVTs' at SparseArray_abind.c:195:10: SparseArray_abind.c:157:25: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 157 | copy_Rvector_elts_FUN(lv_vals, 0, ans_vals, k1, lv_len); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SparseArray_abind.c: In function 'REC_abind_SVTs': SparseArray_abind.c:136:53: note: 'lv_vals' was declared here 136 | SEXP SVT, ans, ans_offs, ans_vals, lv_offs, lv_vals; | ^~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseArray_aperm.c -o SparseArray_aperm.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseArray_class.c -o SparseArray_class.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseArray_dim_tuning.c -o SparseArray_dim_tuning.o SparseArray_dim_tuning.c: In function 'REC_tune_SVT': SparseArray_dim_tuning.c:260:47: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 260 | if (SVT == R_NilValue || nops == ndim && cumallKEEP[ndim - 1]) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseArray_subassignment.c -o SparseArray_subassignment.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseArray_subsetting.c -o SparseArray_subsetting.o In function 'subset_leaf_vector', inlined from 'REC_subset_SVT' at SparseArray_subsetting.c:181:10: SparseArray_subsetting.c:139:42: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 139 | build_lookup_table(lookup_table, INTEGER(lv_offs), lv_len); | ^~~~~~~~~~~~~~~~ SparseArray_subsetting.c: In function 'REC_subset_SVT': SparseArray_subsetting.c:129:14: note: 'lv_offs' was declared here 129 | SEXP lv_offs, lv_vals, ans_offs, ans_vals, ans; | ^~~~~~~ SparseArray_subsetting.c:157:40: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 157 | ans_vals = PROTECT(allocVector(TYPEOF(lv_vals), ans_len)); | ^~~~~~ SparseArray_subsetting.c:129:23: note: 'lv_vals' was declared here 129 | SEXP lv_offs, lv_vals, ans_offs, ans_vals, ans; | ^~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseArray_summarization.c -o SparseArray_summarization.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseMatrix_mult.c -o SparseMatrix_mult.o SparseMatrix_mult.c:392:13: warning: 'crossprod2_mat_lv_double' defined but not used [-Wunused-function] 392 | static void crossprod2_mat_lv_double(const double *mat1, SEXP lv2, | ^~~~~~~~~~~~~~~~~~~~~~~~ SparseMatrix_mult.c:354:13: warning: 'crossprod2_lv_mat_double' defined but not used [-Wunused-function] 354 | static void crossprod2_lv_mat_double(SEXP lv1, const double *mat2, | ^~~~~~~~~~~~~~~~~~~~~~~~ SparseMatrix_mult.c: In function 'expand_double_lv': SparseMatrix_mult.c:85:34: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 85 | _copy_doubles_to_offsets(REAL(lv_vals), INTEGER(lv_offs), lv_len, x); | ^~~~~~~~~~~~~ SparseMatrix_mult.c:81:23: note: 'lv_vals' was declared here 81 | SEXP lv_offs, lv_vals; | ^~~~~~~ SparseMatrix_mult.c:85:49: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 85 | _copy_doubles_to_offsets(REAL(lv_vals), INTEGER(lv_offs), lv_len, x); | ^~~~~~~~~~~~~~~~ SparseMatrix_mult.c:81:14: note: 'lv_offs' was declared here 81 | SEXP lv_offs, lv_vals; | ^~~~~~~ SparseMatrix_mult.c: In function 'lv_has_no_NA': SparseMatrix_mult.c:44:26: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 44 | return has_no_NA(INTEGER(lv_vals), lv_len); | ^~~~~~~~~~~~~~~~ SparseMatrix_mult.c:41:23: note: 'lv_vals' was declared here 41 | SEXP lv_offs, lv_vals; | ^~~~~~~ SparseMatrix_mult.c: In function 'lv_has_no_NaN_or_Inf': SparseMatrix_mult.c:35:34: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 35 | return has_no_NaN_or_Inf(REAL(lv_vals), lv_len); | ^~~~~~~~~~~~~ SparseMatrix_mult.c:32:23: note: 'lv_vals' was declared here 32 | SEXP lv_offs, lv_vals; | ^~~~~~~ SparseMatrix_mult.c: In function 'expand_int_lv': SparseMatrix_mult.c:96:31: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 96 | _copy_ints_to_offsets(INTEGER(lv_vals), INTEGER(lv_offs), lv_len, x); | ^~~~~~~~~~~~~~~~ SparseMatrix_mult.c:92:23: note: 'lv_vals' was declared here 92 | SEXP lv_offs, lv_vals; | ^~~~~~~ SparseMatrix_mult.c:96:49: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 96 | _copy_ints_to_offsets(INTEGER(lv_vals), INTEGER(lv_offs), lv_len, x); | ^~~~~~~~~~~~~~~~ SparseMatrix_mult.c:92:14: note: 'lv_offs' was declared here 92 | SEXP lv_offs, lv_vals; | ^~~~~~~ In function 'lv_has_no_NA', inlined from 'crossprod2_Rpp_int' at SparseMatrix_mult.c:801:14, inlined from 'C_crossprod2_SVT_SVT' at SparseMatrix_mult.c:1105:4: SparseMatrix_mult.c:44:26: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 44 | return has_no_NA(INTEGER(lv_vals), lv_len); | ^~~~~~~~~~~~~~~~ SparseMatrix_mult.c: In function 'C_crossprod2_SVT_SVT': SparseMatrix_mult.c:41:23: note: 'lv_vals' was declared here 41 | SEXP lv_offs, lv_vals; | ^~~~~~~ In function 'lv_has_no_NA', inlined from 'crossprod2_Lpp_int' at SparseMatrix_mult.c:833:14, inlined from 'C_crossprod2_SVT_SVT' at SparseMatrix_mult.c:1114:4: SparseMatrix_mult.c:44:26: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 44 | return has_no_NA(INTEGER(lv_vals), lv_len); | ^~~~~~~~~~~~~~~~ SparseMatrix_mult.c: In function 'C_crossprod2_SVT_SVT': SparseMatrix_mult.c:41:23: note: 'lv_vals' was declared here 41 | SEXP lv_offs, lv_vals; | ^~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c XVector_stubs.c -o XVector_stubs.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c coerceVector2.c -o coerceVector2.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c leaf_vector_Arith.c -o leaf_vector_Arith.o leaf_vector_Arith.c: In function 'Rpow_double': leaf_vector_Arith.c:164:19: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 164 | if (x < 0 && y == R_PosInf || x == R_NegInf && y != trunc(y)) | ~~~~~~^~~~~~~~~~~~~~~~ leaf_vector_Arith.c: In function 'mult0_leaf_vector': leaf_vector_Arith.c:436:13: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 436 | if (TYPEOF(lv_vals) == INTSXP) { | ^~~~~~~~~~~~~~~ leaf_vector_Arith.c:430:23: note: 'lv_vals' was declared here 430 | SEXP lv_offs, lv_vals; | ^~~~~~~ leaf_vector_Arith.c:434:21: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 434 | lv_offs_p = INTEGER(lv_offs); | ^~~~~~~~~~~~~~~~ leaf_vector_Arith.c:430:14: note: 'lv_offs' was declared here 430 | SEXP lv_offs, lv_vals; | ^~~~~~~ leaf_vector_Arith.c: In function '_unary_minus_leaf_vector': leaf_vector_Arith.c:67:43: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 67 | int *ans_vals_p = INTEGER(ans_vals); | ^~~~~~~~~~~~~~~~~ leaf_vector_Arith.c:54:23: note: 'lv_vals' was declared here 54 | SEXP lv_offs, lv_vals, ans_vals, ans; | ^~~~~~~ leaf_vector_Arith.c:109:15: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 109 | ans = _new_leaf_vector(lv_offs, ans_vals); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ leaf_vector_Arith.c:54:14: note: 'lv_offs' was declared here 54 | SEXP lv_offs, lv_vals, ans_vals, ans; | ^~~~~~~ leaf_vector_Arith.c: In function '_Arith_lv1_v2': leaf_vector_Arith.c:384:13: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 384 | if (TYPEOF(lv1_vals) == INTSXP) { | ^~~~~~~~~~~~~~~~ leaf_vector_Arith.c:376:24: note: 'lv1_vals' was declared here 376 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_Arith.c:381:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 381 | offs1_p = INTEGER(lv1_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_Arith.c:376:14: note: 'lv1_offs' was declared here 376 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_Arith.c: In function '_Arith_lv1_lv2': leaf_vector_Arith.c:520:21: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized] 520 | if (TYPEOF(lv2_vals) == INTSXP) { | ^~~~~~~~~~~~~~~~ leaf_vector_Arith.c:487:44: note: 'lv2_vals' was declared here 487 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_Arith.c:516:19: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized] 516 | offs2_p = INTEGER(lv2_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_Arith.c:487:34: note: 'lv2_offs' was declared here 487 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_Arith.c:519:13: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 519 | if (TYPEOF(lv1_vals) == INTSXP) { | ^~~~~~~~~~~~~~~~ leaf_vector_Arith.c:487:24: note: 'lv1_vals' was declared here 487 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_Arith.c:515:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 515 | offs1_p = INTEGER(lv1_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_Arith.c:487:14: note: 'lv1_offs' was declared here 487 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c leaf_vector_Compare.c -o leaf_vector_Compare.o leaf_vector_Compare.c: In function 'Compare_lv1_zero': leaf_vector_Compare.c:645:40: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 645 | offs1, COMPLEX(lv1_vals), lv1_len, Rcomplex0, | ^~~~~~~~~~~~~~~~~ leaf_vector_Compare.c:622:24: note: 'lv1_vals' was declared here 622 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_Compare.c:626:17: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 626 | offs1 = INTEGER(lv1_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_Compare.c:622:14: note: 'lv1_offs' was declared here 622 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_Compare.c: In function '_Compare_lv1_v2': leaf_vector_Compare.c:669:17: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 669 | switch (TYPEOF(lv1_vals)) { | ^~~~~~~~~~~~~~~~ leaf_vector_Compare.c:664:24: note: 'lv1_vals' was declared here 664 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_Compare.c:668:17: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 668 | offs1 = INTEGER(lv1_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_Compare.c:664:14: note: 'lv1_offs' was declared here 664 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ In function 'sparse_Compare_Rcomplexes_lv2', inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:738:13: leaf_vector_Compare.c:582:18: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized] 582 | Rtype2 = TYPEOF(lv2_vals); | ^~~~~~~~~~~~~~~~ leaf_vector_Compare.c: In function '_Compare_lv1_lv2': leaf_vector_Compare.c:576:24: note: 'lv2_vals' was declared here 576 | SEXP lv2_offs, lv2_vals; | ^~~~~~~~ In function 'sparse_Compare_Rcomplexes_lv2', inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:738:13: leaf_vector_Compare.c:581:17: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized] 581 | offs2 = INTEGER(lv2_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_Compare.c: In function '_Compare_lv1_lv2': leaf_vector_Compare.c:576:14: note: 'lv2_offs' was declared here 576 | SEXP lv2_offs, lv2_vals; | ^~~~~~~~ In function 'sparse_Compare_doubles_lv2', inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:733:13: leaf_vector_Compare.c:542:18: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized] 542 | Rtype2 = TYPEOF(lv2_vals); | ^~~~~~~~~~~~~~~~ leaf_vector_Compare.c: In function '_Compare_lv1_lv2': leaf_vector_Compare.c:536:24: note: 'lv2_vals' was declared here 536 | SEXP lv2_offs, lv2_vals; | ^~~~~~~~ In function 'sparse_Compare_doubles_lv2', inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:733:13: leaf_vector_Compare.c:541:17: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized] 541 | offs2 = INTEGER(lv2_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_Compare.c: In function '_Compare_lv1_lv2': leaf_vector_Compare.c:536:14: note: 'lv2_offs' was declared here 536 | SEXP lv2_offs, lv2_vals; | ^~~~~~~~ In function 'sparse_Compare_ints_lv2', inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:728:13: leaf_vector_Compare.c:502:18: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized] 502 | Rtype2 = TYPEOF(lv2_vals); | ^~~~~~~~~~~~~~~~ leaf_vector_Compare.c: In function '_Compare_lv1_lv2': leaf_vector_Compare.c:496:24: note: 'lv2_vals' was declared here 496 | SEXP lv2_offs, lv2_vals; | ^~~~~~~~ In function 'sparse_Compare_ints_lv2', inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:728:13: leaf_vector_Compare.c:501:17: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized] 501 | offs2 = INTEGER(lv2_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_Compare.c: In function '_Compare_lv1_lv2': leaf_vector_Compare.c:496:14: note: 'lv2_offs' was declared here 496 | SEXP lv2_offs, lv2_vals; | ^~~~~~~~ In function 'sparse_Compare_Rbytes_lv2', inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:723:13: leaf_vector_Compare.c:462:18: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized] 462 | Rtype2 = TYPEOF(lv2_vals); | ^~~~~~~~~~~~~~~~ leaf_vector_Compare.c: In function '_Compare_lv1_lv2': leaf_vector_Compare.c:456:24: note: 'lv2_vals' was declared here 456 | SEXP lv2_offs, lv2_vals; | ^~~~~~~~ In function 'sparse_Compare_Rbytes_lv2', inlined from '_Compare_lv1_lv2' at leaf_vector_Compare.c:723:13: leaf_vector_Compare.c:461:17: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized] 461 | offs2 = INTEGER(lv2_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_Compare.c: In function '_Compare_lv1_lv2': leaf_vector_Compare.c:456:14: note: 'lv2_offs' was declared here 456 | SEXP lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_Compare.c:720:18: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 720 | Rtype1 = TYPEOF(lv1_vals); | ^~~~~~~~~~~~~~~~ leaf_vector_Compare.c:705:24: note: 'lv1_vals' was declared here 705 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_Compare.c:719:17: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 719 | offs1 = INTEGER(lv1_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_Compare.c:705:14: note: 'lv1_offs' was declared here 705 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c leaf_vector_Logic.c -o leaf_vector_Logic.o leaf_vector_Logic.c: In function '_Logic_lv1_lv2': leaf_vector_Logic.c:88:44: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized] 88 | INTEGER(lv2_offs), INTEGER(lv2_vals), lv2_len, | ^~~~~~~~~~~~~~~~~ leaf_vector_Logic.c:77:44: note: 'lv2_vals' was declared here 77 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_Logic.c:88:25: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized] 88 | INTEGER(lv2_offs), INTEGER(lv2_vals), lv2_len, | ^~~~~~~~~~~~~~~~~ leaf_vector_Logic.c:77:34: note: 'lv2_offs' was declared here 77 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_Logic.c:87:44: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 87 | INTEGER(lv1_offs), INTEGER(lv1_vals), lv1_len, | ^~~~~~~~~~~~~~~~~ leaf_vector_Logic.c:77:24: note: 'lv1_vals' was declared here 77 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_Logic.c:87:25: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 87 | INTEGER(lv1_offs), INTEGER(lv1_vals), lv1_len, | ^~~~~~~~~~~~~~~~~ leaf_vector_Logic.c:77:14: note: 'lv1_offs' was declared here 77 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c leaf_vector_dotprod.c -o leaf_vector_dotprod.o leaf_vector_dotprod.c: In function '_dotprod_leaf_vectors': leaf_vector_dotprod.c:55:44: warning: 'lv2_vals' may be used uninitialized [-Wmaybe-uninitialized] 55 | INTEGER(lv2_offs), REAL(lv2_vals), lv2_len, | ^~~~~~~~~~~~~~ leaf_vector_dotprod.c:46:44: note: 'lv2_vals' was declared here 46 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_dotprod.c:55:25: warning: 'lv2_offs' may be used uninitialized [-Wmaybe-uninitialized] 55 | INTEGER(lv2_offs), REAL(lv2_vals), lv2_len, | ^~~~~~~~~~~~~~~~~ leaf_vector_dotprod.c:46:34: note: 'lv2_offs' was declared here 46 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_dotprod.c:54:44: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 54 | INTEGER(lv1_offs), REAL(lv1_vals), lv1_len, | ^~~~~~~~~~~~~~ leaf_vector_dotprod.c:46:24: note: 'lv1_vals' was declared here 46 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_dotprod.c:54:25: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 54 | INTEGER(lv1_offs), REAL(lv1_vals), lv1_len, | ^~~~~~~~~~~~~~~~~ leaf_vector_dotprod.c:46:14: note: 'lv1_offs' was declared here 46 | SEXP lv1_offs, lv1_vals, lv2_offs, lv2_vals; | ^~~~~~~~ leaf_vector_dotprod.c: In function '_dotprod_leaf_vector_and_finite_col': leaf_vector_dotprod.c:81:19: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 81 | vals1_p = REAL(lv1_vals); | ^~~~~~~~~~~~~~ leaf_vector_dotprod.c:74:24: note: 'lv1_vals' was declared here 74 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_dotprod.c:80:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 80 | offs1_p = INTEGER(lv1_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_dotprod.c:74:14: note: 'lv1_offs' was declared here 74 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_dotprod.c: In function '_dotprod_leaf_vector_and_double_col': leaf_vector_dotprod.c:104:19: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 104 | vals1_p = REAL(lv1_vals); | ^~~~~~~~~~~~~~ leaf_vector_dotprod.c:96:24: note: 'lv1_vals' was declared here 96 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_dotprod.c:103:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 103 | offs1_p = INTEGER(lv1_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_dotprod.c:96:14: note: 'lv1_offs' was declared here 96 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_dotprod.c: In function '_dotprod_leaf_vector_and_noNA_int_col': leaf_vector_dotprod.c:141:19: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 141 | vals1_p = INTEGER(lv1_vals); | ^~~~~~~~~~~~~~~~~ leaf_vector_dotprod.c:133:24: note: 'lv1_vals' was declared here 133 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_dotprod.c:140:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 140 | offs1_p = INTEGER(lv1_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_dotprod.c:133:14: note: 'lv1_offs' was declared here 133 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_dotprod.c: In function '_dotprod_leaf_vector_and_int_col': leaf_vector_dotprod.c:166:19: warning: 'lv1_vals' may be used uninitialized [-Wmaybe-uninitialized] 166 | vals1_p = INTEGER(lv1_vals); | ^~~~~~~~~~~~~~~~~ leaf_vector_dotprod.c:159:24: note: 'lv1_vals' was declared here 159 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_dotprod.c:165:19: warning: 'lv1_offs' may be used uninitialized [-Wmaybe-uninitialized] 165 | offs1_p = INTEGER(lv1_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_dotprod.c:159:14: note: 'lv1_offs' was declared here 159 | SEXP lv1_offs, lv1_vals; | ^~~~~~~~ leaf_vector_dotprod.c: In function '_dotprod0_leaf_vector': leaf_vector_dotprod.c:222:37: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 222 | return _dotprod0_double_col(REAL(lv_vals), lv_len); | ^~~~~~~~~~~~~ leaf_vector_dotprod.c:219:23: note: 'lv_vals' was declared here 219 | SEXP lv_offs, lv_vals; | ^~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c leaf_vector_summarization.c -o leaf_vector_summarization.o leaf_vector_summarization.c: In function '_summarize_leaf_vector': leaf_vector_summarization.c:21:9: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 21 | _summarize_Rvector(lv_vals, summarize_op, res); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ leaf_vector_summarization.c:14:23: note: 'lv_vals' was declared here 14 | SEXP lv_offs, lv_vals; | ^~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c leaf_vector_utils.c -o leaf_vector_utils.o leaf_vector_utils.c: In function '_make_leaf_vector_from_bufs.part.0': leaf_vector_utils.c:88:9: warning: 'ans_vals' may be used uninitialized [-Wmaybe-uninitialized] 88 | memcpy(DATAPTR(ans_vals), vals_buf, Rtype_size * buf_len); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ leaf_vector_utils.c:76:29: note: 'ans_vals' was declared here 76 | SEXP ans, ans_offs, ans_vals; | ^~~~~~~~ leaf_vector_utils.c:87:16: warning: 'ans_offs' may be used uninitialized [-Wmaybe-uninitialized] 87 | memcpy(INTEGER(ans_offs), offs_buf, sizeof(int) * buf_len); | ^~~~~~~~~~~~~~~~~ leaf_vector_utils.c:76:19: note: 'ans_offs' was declared here 76 | SEXP ans, ans_offs, ans_vals; | ^~~~~~~~ leaf_vector_utils.c: In function '_remove_zeros_from_leaf_vector': leaf_vector_utils.c:169:19: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 169 | ans_len = _collect_offsets_of_nonzero_Rsubvec_elts( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | lv_vals, 0, lv_len, | ~~~~~~~~~~~~~~~~~~~ 171 | offs_buf); | ~~~~~~~~~ leaf_vector_utils.c:165:23: note: 'lv_vals' was declared here 165 | SEXP lv_offs, lv_vals, ans_offs, ans_vals, ans; | ^~~~~~~ leaf_vector_utils.c:178:29: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 178 | _copy_selected_ints(INTEGER(lv_offs), offs_buf, ans_len, | ^~~~~~~~~~~~~~~~ leaf_vector_utils.c:165:14: note: 'lv_offs' was declared here 165 | SEXP lv_offs, lv_vals, ans_offs, ans_vals, ans; | ^~~~~~~ leaf_vector_utils.c: In function '_coerce_leaf_vector': leaf_vector_utils.c:207:43: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 207 | if (_coercion_can_introduce_zeros(TYPEOF(lv_vals), new_Rtype)) | ^~~~~~~~~~~~~~~ leaf_vector_utils.c:200:23: note: 'lv_vals' was declared here 200 | SEXP lv_offs, lv_vals, ans_vals, ans; | ^~~~~~~ In file included from F:/biocbuild/bbs-3.17-bioc/R/include/Rdefines.h:41, from leaf_vector_utils.h:4, from leaf_vector_utils.c:4: F:/biocbuild/bbs-3.17-bioc/R/include/Rinternals.h:368:25: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 368 | #define PROTECT(s) Rf_protect(s) | ^~~~~~~~~~ leaf_vector_utils.c:200:14: note: 'lv_offs' was declared here 200 | SEXP lv_offs, lv_vals, ans_vals, ans; | ^~~~~~~ leaf_vector_utils.c: In function '_subassign_leaf_vector_with_Rvector': leaf_vector_utils.c:294:25: warning: 'ans_vals' may be used uninitialized [-Wmaybe-uninitialized] 294 | copy_Rvector_elt_FUN(lv_vals, (R_xlen_t) k1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 | ans_vals, (R_xlen_t) k); | ~~~~~~~~~~~~~~~~~~~~~~~ leaf_vector_utils.c:231:47: note: 'ans_vals' was declared here 231 | SEXP lv_offs, lv_vals, ans, ans_offs, ans_vals; | ^~~~~~~~ leaf_vector_utils.c:289:22: warning: 'ans_offs' may be used uninitialized [-Wmaybe-uninitialized] 289 | ans_offs_p = INTEGER(ans_offs); | ^~~~~~~~~~~~~~~~~ leaf_vector_utils.c:231:37: note: 'ans_offs' was declared here 231 | SEXP lv_offs, lv_vals, ans, ans_offs, ans_vals; | ^~~~~~~~ leaf_vector_utils.c:239:17: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 239 | Rtype = TYPEOF(lv_vals); | ^~~~~~~~~~~~~~~ leaf_vector_utils.c:231:23: note: 'lv_vals' was declared here 231 | SEXP lv_offs, lv_vals, ans, ans_offs, ans_vals; | ^~~~~~~ leaf_vector_utils.c:287:19: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 287 | offs1_p = INTEGER(lv_offs); | ^~~~~~~~~~~~~~~~ leaf_vector_utils.c:231:14: note: 'lv_offs' was declared here 231 | SEXP lv_offs, lv_vals, ans, ans_offs, ans_vals; | ^~~~~~~ leaf_vector_utils.c: In function '_lv_apply_to_REALSXP': leaf_vector_utils.c:374:20: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 374 | in_Rtype = TYPEOF(lv_vals); | ^~~~~~~~~~~~~~~ leaf_vector_utils.c:368:23: note: 'lv_vals' was declared here 368 | SEXP lv_offs, lv_vals; | ^~~~~~~ leaf_vector_utils.c:373:16: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 373 | offs = INTEGER(lv_offs); | ^~~~~~~~~~~~~~~~ leaf_vector_utils.c:368:14: note: 'lv_offs' was declared here 368 | SEXP lv_offs, lv_vals; | ^~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c matrixStats_methods.c -o matrixStats_methods.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c randomSparseArray.c -o randomSparseArray.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c readSparseCSV.c -o readSparseCSV.o In function 'load_csv_row_to_AEbufs', inlined from 'read_sparse_csv' at readSparseCSV.c:342:4, inlined from 'C_readSparseCSV_as_SVT_SparseMatrix' at readSparseCSV.c:402:11: readSparseCSV.c:255:25: warning: 'vals_buf' may be used uninitialized [-Wmaybe-uninitialized] 255 | load_csv_data_to_AEbufs(data, data_len, col_idx - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | offs_buf, vals_buf); | ~~~~~~~~~~~~~~~~~~~ readSparseCSV.c: In function 'C_readSparseCSV_as_SVT_SparseMatrix': readSparseCSV.c:307:27: note: 'vals_buf' was declared here 307 | IntAE *offs_buf, *vals_buf; | ^~~~~~~~ In function 'load_csv_row_to_AEbufs', inlined from 'read_sparse_csv' at readSparseCSV.c:342:4, inlined from 'C_readSparseCSV_as_SVT_SparseMatrix' at readSparseCSV.c:402:11: readSparseCSV.c:255:25: warning: 'offs_buf' may be used uninitialized [-Wmaybe-uninitialized] 255 | load_csv_data_to_AEbufs(data, data_len, col_idx - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | offs_buf, vals_buf); | ~~~~~~~~~~~~~~~~~~~ readSparseCSV.c: In function 'C_readSparseCSV_as_SVT_SparseMatrix': readSparseCSV.c:307:16: note: 'offs_buf' was declared here 307 | IntAE *offs_buf, *vals_buf; | ^~~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rowsum_methods.c -o rowsum_methods.o In function 'rowsum_SVT_int', inlined from 'C_rowsum_SVT' at rowsum_methods.c:173:3: rowsum_methods.c:109:25: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 109 | INTEGER(lv_vals), INTEGER(lv_offs), lv_len, | ^~~~~~~~~~~~~~~~ rowsum_methods.c: In function 'C_rowsum_SVT': rowsum_methods.c:98:31: note: 'lv_vals' was declared here 98 | SEXP subSVT, lv_offs, lv_vals; | ^~~~~~~ In function 'rowsum_SVT_int', inlined from 'C_rowsum_SVT' at rowsum_methods.c:173:3: rowsum_methods.c:109:43: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 109 | INTEGER(lv_vals), INTEGER(lv_offs), lv_len, | ^~~~~~~~~~~~~~~~ rowsum_methods.c: In function 'C_rowsum_SVT': rowsum_methods.c:98:22: note: 'lv_offs' was declared here 98 | SEXP subSVT, lv_offs, lv_vals; | ^~~~~~~ In function 'rowsum_SVT_double', inlined from 'C_rowsum_SVT' at rowsum_methods.c:168:3: rowsum_methods.c:88:25: warning: 'lv_vals' may be used uninitialized [-Wmaybe-uninitialized] 88 | REAL(lv_vals), INTEGER(lv_offs), lv_len, | ^~~~~~~~~~~~~ rowsum_methods.c: In function 'C_rowsum_SVT': rowsum_methods.c:78:31: note: 'lv_vals' was declared here 78 | SEXP subSVT, lv_offs, lv_vals; | ^~~~~~~ In function 'rowsum_SVT_double', inlined from 'C_rowsum_SVT' at rowsum_methods.c:168:3: rowsum_methods.c:88:40: warning: 'lv_offs' may be used uninitialized [-Wmaybe-uninitialized] 88 | REAL(lv_vals), INTEGER(lv_offs), lv_len, | ^~~~~~~~~~~~~~~~ rowsum_methods.c: In function 'C_rowsum_SVT': rowsum_methods.c:78:22: note: 'lv_offs' was declared here 78 | SEXP subSVT, lv_offs, lv_vals; | ^~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sparseMatrix_utils.c -o sparseMatrix_utils.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/XVector/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test.c -o test.o gcc -shared -s -static-libgcc -o SparseArray.dll tmp.def ExtendableJaggedArray.o IRanges_stubs.o R_init_SparseArray.o Rvector_summarization.o Rvector_utils.o S4Vectors_stubs.o SBT_utils.o SVT_SparseArray_class.o SparseArray_Complex_methods.o SparseArray_Math_methods.o SparseArray_Ops_methods.o SparseArray_abind.o SparseArray_aperm.o SparseArray_class.o SparseArray_dim_tuning.o SparseArray_subassignment.o SparseArray_subsetting.o SparseArray_summarization.o SparseMatrix_mult.o XVector_stubs.o coerceVector2.o leaf_vector_Arith.o leaf_vector_Compare.o leaf_vector_Logic.o leaf_vector_dotprod.o leaf_vector_summarization.o leaf_vector_utils.o matrixStats_methods.o randomSparseArray.o readSparseCSV.o rowsum_methods.o sparseMatrix_utils.o test.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc/meat/SparseArray.buildbin-libdir/00LOCK-SparseArray/00new/SparseArray/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'SparseArray' as SparseArray_1.0.12.zip * DONE (SparseArray)