Back to Multiple platform build/check report for BioC 3.17:   simplified   long
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2023-10-16 11:36:40 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1957/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SNPRelate 1.34.1  (landing page)
Xiuwen Zheng
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/SNPRelate
git_branch: RELEASE_3_17
git_last_commit: 8a20e85
git_last_commit_date: 2023-05-01 20:07:52 -0400 (Mon, 01 May 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD BIN results for SNPRelate on palomino3


To the developers/maintainers of the SNPRelate package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPRelate.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SNPRelate
Version: 1.34.1
Command: rm -rf SNPRelate.buildbin-libdir && mkdir SNPRelate.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=SNPRelate.buildbin-libdir SNPRelate_1.34.1.tar.gz
StartedAt: 2023-10-16 09:34:17 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 09:35:32 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 75.0 seconds
RetCode: 0
Status:   OK  
PackageFile: SNPRelate_1.34.1.zip
PackageFileSize: 2.654 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SNPRelate.buildbin-libdir && mkdir SNPRelate.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=SNPRelate.buildbin-libdir SNPRelate_1.34.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'SNPRelate' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ConvToGDS.cpp -o ConvToGDS.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_SNPRelate.c -o R_SNPRelate.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SNPRelate.cpp -o SNPRelate.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ThreadPool.cpp -o ThreadPool.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dGenGWAS.cpp -o dGenGWAS.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dVect.cpp -o dVect.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genBeta.cpp -o genBeta.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genEIGMIX.cpp -o genEIGMIX.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genFst.cpp -o genFst.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genHWE.cpp -o genHWE.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genIBD.cpp -o genIBD.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genIBS.cpp -o genIBS.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genKING.cpp -o genKING.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genLD.cpp -o genLD.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genPCA.cpp -o genPCA.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'F:/biocbuild/bbs-3.17-bioc/R/library/gdsfmt/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c genSlideWin.cpp -o genSlideWin.o
g++ -std=gnu++17 -shared -s -static-libgcc -o SNPRelate.dll tmp.def ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/meat/SNPRelate.buildbin-libdir/00LOCK-SNPRelate/00new/SNPRelate/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'SNPRelate' as SNPRelate_1.34.1.zip
* DONE (SNPRelate)