############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r SIAMCAT -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SIAMCAT ### ############################################################################## ############################################################################## * checking for file 'SIAMCAT/DESCRIPTION' ... OK * preparing 'SIAMCAT': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'SIAMCAT_confounder.Rmd' using rmarkdown Quitting from lines 160-179 [load_motus] (SIAMCAT_confounder.Rmd) Error: processing vignette 'SIAMCAT_confounder.Rmd' failed with diagnostics: HTTP error 404. --- failed re-building 'SIAMCAT_confounder.Rmd' --- re-building 'SIAMCAT_holdout.Rmd' using rmarkdown Quitting from lines 55-69 [siamcat_fr] (SIAMCAT_holdout.Rmd) Error: processing vignette 'SIAMCAT_holdout.Rmd' failed with diagnostics: cannot open the connection to 'https://zenodo.org/api/files/d81e429c-870f-44e0-a44a-2a4aa541b6c1/specI_Zeller.tsv' --- failed re-building 'SIAMCAT_holdout.Rmd' --- re-building 'SIAMCAT_meta.Rmd' using rmarkdown Quitting from lines 49-62 [load_data] (SIAMCAT_meta.Rmd) Error: processing vignette 'SIAMCAT_meta.Rmd' failed with diagnostics: HTTP error 404. --- failed re-building 'SIAMCAT_meta.Rmd' --- re-building 'SIAMCAT_ml_pitfalls.Rmd' using rmarkdown Quitting from lines 341-350 [load_data_ibd] (SIAMCAT_ml_pitfalls.Rmd) Error: processing vignette 'SIAMCAT_ml_pitfalls.Rmd' failed with diagnostics: HTTP error 404. --- failed re-building 'SIAMCAT_ml_pitfalls.Rmd' --- re-building 'SIAMCAT_read-in.Rmd' using rmarkdown --- finished re-building 'SIAMCAT_read-in.Rmd' --- re-building 'SIAMCAT_vignette.Rmd' using rmarkdown --- finished re-building 'SIAMCAT_vignette.Rmd' SUMMARY: processing the following files failed: 'SIAMCAT_confounder.Rmd' 'SIAMCAT_holdout.Rmd' 'SIAMCAT_meta.Rmd' 'SIAMCAT_ml_pitfalls.Rmd' Error: Vignette re-building failed. Execution halted