Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-10-16 11:37:32 -0400 (Mon, 16 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1901/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SGCP 1.0.0 (landing page) Niloofar AghaieAbiane
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the SGCP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SGCP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SGCP |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SGCP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SGCP_1.0.0.tar.gz |
StartedAt: 2023-10-16 07:03:36 -0400 (Mon, 16 Oct 2023) |
EndedAt: 2023-10-16 07:16:21 -0400 (Mon, 16 Oct 2023) |
EllapsedTime: 765.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SGCP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SGCP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SGCP_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/SGCP.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.6.4 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SGCP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SGCP’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SGCP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SGCP_semiSupervised 5.558 0.072 7.094 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SGCP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SGCP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘SGCP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SGCP)
SGCP.Rcheck/SGCP-Ex.timings
name | user | system | elapsed | |
SGCP_adjacencyMatrix | 0.164 | 0.036 | 0.265 | |
SGCP_clustering | 0.436 | 0.027 | 0.599 | |
SGCP_ezPLOT | 0.524 | 0.033 | 0.730 | |
SGCP_ezSGCP | 0.403 | 0.029 | 0.575 | |
SGCP_go | 0.276 | 0.018 | 0.388 | |
SGCP_plot_bar | 0.788 | 0.026 | 1.125 | |
SGCP_plot_conductance | 0.639 | 0.007 | 0.939 | |
SGCP_plot_density | 0.600 | 0.048 | 0.890 | |
SGCP_plot_heatMap | 1.181 | 0.118 | 1.631 | |
SGCP_plot_jitter | 0.507 | 0.010 | 0.713 | |
SGCP_plot_pca | 0.276 | 0.004 | 0.356 | |
SGCP_plot_pie | 1.210 | 0.015 | 1.546 | |
SGCP_plot_silhouette | 1.325 | 0.019 | 1.714 | |
SGCP_semiLabeling | 0.154 | 0.010 | 0.209 | |
SGCP_semiSupervised | 5.558 | 0.072 | 7.094 | |
cheng | 0.338 | 0.022 | 0.452 | |
resClus | 1.345 | 0.367 | 2.162 | |
resFinalGO | 0.081 | 0.014 | 0.122 | |
resInitialGO | 0.081 | 0.014 | 0.117 | |
resSemiLabel | 0.010 | 0.004 | 0.018 | |
resSemiSupervised | 0.065 | 0.004 | 0.096 | |
sgcp | 0.196 | 0.006 | 0.254 | |