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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PloGO2
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* checking for file ‘PloGO2/DESCRIPTION’ ... OK
* preparing ‘PloGO2’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘PloGO2_vignette.Rnw’ using Sweave
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:utils’:

    findMatches

The following objects are masked from ‘package:base’:

    I, expand.grid, unname


Loading required package: GOstats
Loading required package: Category
Loading required package: Matrix

Attaching package: ‘Matrix’

The following object is masked from ‘package:S4Vectors’:

    expand

Loading required package: graph

Attaching package: ‘GOstats’

The following object is masked from ‘package:AnnotationDbi’:

    makeGOGraph

Error in curl::curl_fetch_memory(url, handle = handle) : 
  Timeout was reached: [rest.uniprot.org] SSL connection timeout
Error in getUniprotBatch(values = Uniprot[from[jj]:to[jj]], attributes = c("accession",  : 
  Error downloading records from Uniprot

Error: processing vignette 'PloGO2_vignette.Rnw' failed with diagnostics:
 chunk 2 (label = genFile) 
Error in bm.res[, 2] : incorrect number of dimensions

--- failed re-building ‘PloGO2_vignette.Rnw’

--- re-building ‘PloGO2_with_WGNCA_vignette.Rnw’ using Sweave
Loading required package: dynamicTreeCut
Loading required package: fastcluster

Attaching package: ‘fastcluster’

The following object is masked from ‘package:stats’:

    hclust


Attaching package: ‘WGCNA’

The following object is masked from ‘package:IRanges’:

    cor

The following object is masked from ‘package:S4Vectors’:

    cor

The following object is masked from ‘package:stats’:

    cor

dev.new(): using pdf(file="Rplots1.pdf")
--- finished re-building ‘PloGO2_with_WGNCA_vignette.Rnw’

SUMMARY: processing the following file failed:
  ‘PloGO2_vignette.Rnw’

Error: Vignette re-building failed.
Execution halted