############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r ORFik -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ORFik ### ############################################################################## ############################################################################## * checking for file 'ORFik/DESCRIPTION' ... OK * preparing 'ORFik': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Annotation_Alignment.Rmd' using rmarkdown --- finished re-building 'Annotation_Alignment.Rmd' --- re-building 'Importing_Data.Rmd' using rmarkdown Quitting from lines 152-164 [unnamed-chunk-7] (Importing_Data.Rmd) Error: processing vignette 'Importing_Data.Rmd' failed with diagnostics: Could not find genome, check spelling! --- failed re-building 'Importing_Data.Rmd' --- re-building 'ORFikExperiment.Rmd' using rmarkdown --- finished re-building 'ORFikExperiment.Rmd' --- re-building 'ORFikOverview.Rmd' using rmarkdown --- finished re-building 'ORFikOverview.Rmd' --- re-building 'Ribo-seq_pipeline.Rmd' using rmarkdown --- finished re-building 'Ribo-seq_pipeline.Rmd' --- re-building 'Working_with_transcripts.Rmd' using rmarkdown Quitting from lines 29-42 [unnamed-chunk-1] (Working_with_transcripts.Rmd) Error: processing vignette 'Working_with_transcripts.Rmd' failed with diagnostics: Could not find genome, check spelling! --- failed re-building 'Working_with_transcripts.Rmd' SUMMARY: processing the following files failed: 'Importing_Data.Rmd' 'Working_with_transcripts.Rmd' Error: Vignette re-building failed. Execution halted