############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ODER ### ############################################################################## ############################################################################## * checking for file ‘ODER/DESCRIPTION’ ... OK * preparing ‘ODER’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ODER_overview.Rmd’ using rmarkdown Loading required namespace: ODER trying URL 'https://github.com/leekgroup/recount-website/blob/master/metadata/metadata_clean_gtex.Rdata?raw=true' Content type 'application/octet-stream' length 2817518 bytes (2.7 MB) ================================================== downloaded 2.7 MB Quitting from lines 265-311 [annotatER_example] (ODER_overview.Rmd) Error: processing vignette 'ODER_overview.Rmd' failed with diagnostics: error in evaluating the argument 'i' in selecting a method for function '[': could not find function "queryHits" --- failed re-building ‘ODER_overview.Rmd’ SUMMARY: processing the following file failed: ‘ODER_overview.Rmd’ Error: Vignette re-building failed. Execution halted