############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r LineagePulse -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data LineagePulse ### ############################################################################## ############################################################################## * checking for file 'LineagePulse/DESCRIPTION' ... OK * preparing 'LineagePulse': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'LineagePulse_Tutorial.Rmd' using rmarkdown Warning: The closing backticks on line 101 ("```") in LineagePulse_Tutorial.Rmd do not match the opening backticks " ```" on line 94. You are recommended to fix either the opening or closing delimiter of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote). Quitting from lines 95-101 [plot-genes] (LineagePulse_Tutorial.Rmd) Error: processing vignette 'LineagePulse_Tutorial.Rmd' failed with diagnostics: incorrect number of dimensions --- failed re-building 'LineagePulse_Tutorial.Rmd' SUMMARY: processing the following file failed: 'LineagePulse_Tutorial.Rmd' Error: Vignette re-building failed. Execution halted