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This page was generated on 2023-10-16 11:37:11 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1065/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LineagePulse 1.20.0  (landing page)
David S Fischer
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/LineagePulse
git_branch: RELEASE_3_17
git_last_commit: d7ae0db
git_last_commit_date: 2023-04-25 10:58:25 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for LineagePulse on merida1


To the developers/maintainers of the LineagePulse package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LineagePulse.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: LineagePulse
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data LineagePulse
StartedAt: 2023-10-15 19:09:30 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 19:11:26 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 116.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data LineagePulse
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* checking for file ‘LineagePulse/DESCRIPTION’ ... OK
* preparing ‘LineagePulse’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘LineagePulse_Tutorial.Rmd’ using rmarkdown
Warning: The closing backticks on line 101 ("```") in LineagePulse_Tutorial.Rmd do not match the opening backticks "  ```" on line 94. You are recommended to fix either the opening or closing delimiter of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote).

Quitting from lines 95-101 [plot-genes] (LineagePulse_Tutorial.Rmd)
Error: processing vignette 'LineagePulse_Tutorial.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building ‘LineagePulse_Tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘LineagePulse_Tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted