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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:GenomicTuples.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings GenomicTuples_1.34.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/GenomicTuples.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘GenomicTuples/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GenomicTuples’ version ‘1.34.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GenomicTuples’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  ‘GenomicRanges:::extraColumnSlotNames’
  ‘GenomicRanges:::extraColumnSlots’
  ‘GenomicRanges:::extraColumnSlotsAsDF’ ‘S4Vectors:::VH_recycle’
  ‘S4Vectors:::orderBy’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) GTuples-class.Rd:127-155: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:181-189: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:190-205: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:206-211: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:212-218: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:227-230: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:232-234: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:236-240: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:242-246: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:248-258: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:260-263: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:265-269: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:271-280: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:282-286: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:288-292: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:294-302: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:304-309: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:311-316: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:318-323: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:325-330: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:332-335: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:346-352: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:354-360: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:362-367: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:369-377: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:385-389: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:391-396: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:398-406: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:408-417: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:426-431: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:433-436: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:438-443: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:445-465: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:467-471: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:473-478: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:480-490: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:491-504: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:506-520: \item in \describe must have non-empty label
checkRd: (5) GTuples-class.Rd:527-541: \item in \describe must have non-empty label
checkRd: (5) GTuples-comparison.Rd:120-134: \item in \describe must have non-empty label
checkRd: (5) GTuples-comparison.Rd:135-141: \item in \describe must have non-empty label
checkRd: (5) GTuples-comparison.Rd:142-149: \item in \describe must have non-empty label
checkRd: (5) GTuples-comparison.Rd:150-155: \item in \describe must have non-empty label
checkRd: (5) GTuples-comparison.Rd:156-161: \item in \describe must have non-empty label
checkRd: (5) GTuples-comparison.Rd:162-166: \item in \describe must have non-empty label
checkRd: (5) GTuples-comparison.Rd:167-171: \item in \describe must have non-empty label
checkRd: (5) GTuples-comparison.Rd:172-179: \item in \describe must have non-empty label
checkRd: (5) GTuples-comparison.Rd:180-184: \item in \describe must have non-empty label
checkRd: (5) GTuples-comparison.Rd:185-190: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:65-69: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:78-81: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:82-85: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:86-89: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:90-94: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:95-101: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:102-107: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:108-119: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:120-129: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:130-136: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:137-141: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:142-146: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:147-155: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:156-162: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:163-168: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:169-174: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:175-180: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:181-184: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:196-202: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:204-210: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:212-218: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:220-228: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:236-242: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:243-245: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:248-254: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:262-268: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:269-273: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:274-278: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:279-285: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:286-298: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:299-304: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:305-311: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:319-325: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:326-331: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:332-335: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:343-347: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:348-355: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:356-360: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:361-367: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:368-373: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:374-386: \item in \describe must have non-empty label
checkRd: (5) GTuplesList-class.Rd:387-393: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘GenomicTuplesIntroduction.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/GenomicTuples.Rcheck/00check.log’
for details.