Multiple platform build/check report for BioC 3.17 - BUILD BIN results for GSVA on palomino3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.2 LTS)	x86_64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4626
palomino3	Windows Server 2022 Datacenter	x64	4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"	4379
merida1	macOS 12.6.4 Monterey	x86_64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4395
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the GSVA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSVA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

Summary

Package: GSVA

Version: 1.48.3

Command: rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=GSVA.buildbin-libdir GSVA_1.48.3.tar.gz

StartedAt: 2023-10-16 08:54:47 -0400 (Mon, 16 Oct 2023)

EndedAt: 2023-10-16 08:55:31 -0400 (Mon, 16 Oct 2023)

EllapsedTime: 44.7 seconds

RetCode: 0

Status: OK

PackageFile: GSVA_1.48.3.zip

PackageFileSize: 1.514 MiB

Command output

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### Running command:
###
###   rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=GSVA.buildbin-libdir GSVA_1.48.3.tar.gz
###
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* installing *source* package 'GSVA' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kernel_estimation.c -o kernel_estimation.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ks_test.c -o ks_test.o
ks_test.c: In function 'ks_sample':
ks_test.c:24:16: warning: unused variable 'mx_value' [-Wunused-variable]
   24 |         double mx_value = 0.0;
      |                ^~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c register_cmethods.c -o register_cmethods.o
gcc -shared -s -static-libgcc -o GSVA.dll tmp.def kernel_estimation.o ks_test.o register_cmethods.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/meat/GSVA.buildbin-libdir/00LOCK-GSVA/00new/GSVA/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GSVA' as GSVA_1.48.3.zip
* DONE (GSVA)