############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOsummaries ### ############################################################################## ############################################################################## * checking for file ‘GOsummaries/DESCRIPTION’ ... OK * preparing ‘GOsummaries’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GOsummaries-basics.Rnw’ using Sweave This is vegan 2.6-4 Warning: Please consider using the new package "gprofiler2". At the moment you are using a deprecated package relying on outdated data. More information at https://biit.cs.ut.ee/gprofiler/page/r-new. Feel free to contact us at biit.support@ut.ee for further help. Error: processing vignette 'GOsummaries-basics.Rnw' failed with diagnostics: chunk 3 (label = example1) Error : Internal Server Error --- failed re-building ‘GOsummaries-basics.Rnw’ SUMMARY: processing the following file failed: ‘GOsummaries-basics.Rnw’ Error: Vignette re-building failed. Execution halted